Search found 162 matches

by bjoern
17.07.2012, 00:27
Forum: PROJECTnews
Topic: CELLmicrocosmos.org has moved!
Replies: 4
Views: 34393

Re: CELLmicrocosmos.org is moving now!

The CELLmicrocosmos page has moved from Netbeat to Variomedia. The process is finished. Until now, the guys from Variomedia did a very good job. In addition, the database, the server media as well as the customer service are much faster! So we hope for the best and that such long-term outtakes will ...
by bjoern
16.07.2012, 22:20
Forum: PROJECTnews
Topic: CELLmicrocosmos.org has moved!
Replies: 4
Views: 34393

Re: CELLmicrocosmos.org is moving now!

The MembraneEditor site has moved now completely and the new release 2.2.1_2 is now available via Web Start and Source Code from the new server. Next, the Cm1/Cm4 project page will be updated.
by bjoern
12.07.2012, 15:45
Forum: PROJECTnews
Topic: CELLmicrocosmos.org has moved!
Replies: 4
Views: 34393

Re: CELLmicrocosmos.org is moving now!

As of 12.07.2012, the SSL certificate already works from some servers!
by bjoern
10.07.2012, 14:19
Forum: PROJECTnews
Topic: CELLmicrocosmos.org has moved!
Replies: 4
Views: 34393

Re: CELLmicrocosmos.org is moving now!

The domains have moved (10.07.). Now the internal linking has to be fixed and the new adressing must be available by all webservers, this may take a few hours. In addition, the SSL certificate has to be renewed. Meanwhile the WebStart applications will not run. The SSL certificate usually needs a fe...
by bjoern
07.07.2012, 14:55
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Tune the MembraneEditor! Part II: Fun with 3D-Stereoscopy
Replies: 1
Views: 21763

Re: Tune the MembraneEditor Part II: Fun with 3D-Stereoscopy

Stereoscopy in the MembraneEditor After starting the MembraneEditor, you should read now this in the console: StereoView enabled. Please use the StereoView window to adjust the settings. The MembraneEditor will look like this: CmME_stereo_5.PNG Use now the slider in the upper right part of the wind...
by bjoern
07.07.2012, 14:08
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Tune the MembraneEditor! Part II: Fun with 3D-Stereoscopy
Replies: 1
Views: 21763

Tune the MembraneEditor! Part II: Fun with 3D-Stereoscopy

To run the MembraneEditor in Stereoscopy mode, you will need a professional 3D graphic card like the nVidia Quadro (FX) series or the ATI Fire GL cards. (We are currently working also on a solution working with customer nVidia GTX cards and Stereo Vision, but at the moment there are still some probl...
by bjoern
07.07.2012, 11:02
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Install the MembraneEditor from Source with Eclipse
Replies: 0
Views: 26650

Install the MembraneEditor from Source with Eclipse

Introduction In this article I show you how to install the MembraneEditor from source using Eclipse. For an experienced user of Eclipse, this is a task which takes ca. 5 minutes. This tutorial explains in detail every step also for people not familiar with Eclipse. Requirements Make sure you have i...
by bjoern
02.07.2012, 10:59
Forum: PROJECTnews
Topic: CELLmicrocosmos.org has moved!
Replies: 4
Views: 34393

CELLmicrocosmos.org has moved!

Because of ongoing technical problems with my old web space provider Netbeat.de, we decided to move the whole CELLmicrocosmos representation to another provider. Obviously, Netbeat is not interested in solving the problems limiting the download capabilities of the whole website. At the moment, our w...
by bjoern
25.06.2012, 11:18
Forum: PROJECTnews
Topic: Ongoing trouble with our Web Space provider in June 2012
Replies: 0
Views: 21037

Ongoing trouble with our Web Space provider in June 2012

We are sorry for some outtakes during June 2012. Since the beginning of June, larger files can not be downloaded during most of the time. For this purpose, our major applications were mirrored at a server of the AG Bio-/Medical Informatics Department were the software is being developed. The connect...
by bjoern
10.06.2012, 09:35
Forum: Genome-wide biological Network Modeling and Analysis (Ming Chen) SS 2012
Topic: Abstract
Replies: 0
Views: 44761

Abstract

392233 Genome-wide biological Network Modeling and Analysis (BS) (SS 2012) Abstract With the support of high-throughput technologies and advanced tools, more and more achievements of large-scale biological network models have come out in recent years. It is clear that genome-wide models have become ...
by bjoern
09.05.2012, 13:05
Forum: Cell Visualization SS 2012
Topic: Blender Molecular Visualization Tutorial II [ENGLISH]
Replies: 0
Views: 18735

Blender Molecular Visualization Tutorial II [ENGLISH]

This is the Handout of the second Blender Molecular Visualization Tutorial given at 09.05.2012. The presented Blender version was 1.62.

This Handout includes:
  • Plugin: ePMV
  • The generation of a simple Nucleus model
by bjoern
08.05.2012, 13:06
Forum: Stereoscopic 3D Visualization WS2011/12
Topic: Tutorial 2: My 3D Video on YouTube!
Replies: 1
Views: 43837

Re: Tutorial 2: My 3D Video on YouTube!

Optional YouTube Settings If the format on YouTube is wrong or something is really strange with your 3D video, then you can define manually tags to fix this problem: To change the aspect ratio, use this setting: yt3d:aspect=X:Y (For example 4:3, 16:9 or 1:1) If something is strange and the left and...
by bjoern
02.05.2012, 20:00
Forum: PROJECTnews
Topic: SSL Certificate renewed at 08.05.2012
Replies: 0
Views: 16181

SSL Certificate renewed at 08.05.2012

The SSL Certificate for CELLmicrocosmos.org was outdated since 19.03.2012 00:59. Our provider did not automatically extend it. This was a problem when downloading our applications or when updating it using the Internet. It still worked, but warning messages will appear. We are sorry for any inconven...
by bjoern
02.05.2012, 19:10
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Tune the MembraneEditor! Part I: Fun with Java Heap Space
Replies: 1
Views: 22965

Re: Tune the MembraneEditor! Fun with Java Heap Space

Fast Tuning for your VM - plug'n'play!

Code: Select all

-Xmx6428m
-Xms4028m
-Xss100m
-Xrs
-XX:+UseConcMarkSweepGC
-XX:SoftRefLRUPolicyMSPerMB=1
Do not forget to change the Xmx/Xms arguments to be compatible to the size of your memory (the example stated above is compatible to a 64 bit machine with 8 GB Ram).
by bjoern
02.05.2012, 17:42
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Tune the MembraneEditor! Part I: Fun with Java Heap Space
Replies: 1
Views: 22965

Tune the MembraneEditor! Part I: Fun with Java Heap Space

If you want to generate small or medium size membranes using the MembraneEditor, the following section will not be very interesting for you. If you want to generate larger files and you are using a 64 bit machine, usually this section will also not be of concern. But if you want to generate over-si...