Search found 162 matches

by bjoern
21.10.2014, 14:33
Forum: CmCM Cell Modelling
Topic: Cell Modelling WS2014-15
Replies: 0
Views: 18155

Cell Modelling WS2014-15

Here, you will find soon the material for this year's CELLmicrocosmos meets Blender workshop. This year, Niklas Biere will join this tutorial as tutor and share some of his Blender experiences! Tutorial I This tutorial describes the basic functionality of Blender. It is important to go through the w...
by bjoern
10.09.2014, 15:27
Forum: Cm2 MembraneEditor
Topic: Questions
Replies: 10
Views: 54530

Re: Questions

Hmmm ... maybe there is some kind of .stl import plugin you just have to copy and paste. But I don't have an coding experience with Java, so I don't know the pitfalls. [...] Maybe you could prolong the time out limit after which you get automatically logged out? If I did not copy the bug report bef...
by bjoern
19.08.2014, 15:58
Forum: CmCM Cell Modelling
Topic: C3-B3Harbin 2014: CELLmicrocosmos Workshop
Replies: 1
Views: 13828

C3-B3Harbin 2014: CELLmicrocosmos Workshop

CELLmicrocosmos Workshop: Cell Modeling at the Mesoscopic and Functional Level The handout of the workshop C3-B3_2014_Harbin_Cm+Blender_Workshop__1_0.pdf The files for the workshop C3-B3_2014_Harbin_Cm+Blender_Workshop__1_0.zip Link to the C3-B3 web page http://www.cls.zju.edu.cn/binfo/C3/2014 Link...
by bjoern
30.07.2014, 19:21
Forum: Cm2 MembraneEditor
Topic: Questions
Replies: 10
Views: 54530

Re: Questions

Of course, this project is very lively - although the discussions in the forum could be more! "alive", yes :mrgreen: So thanks to your revival! And I have a lot of stuff to extend the MembraneEditor lying around here which is waiting for publication but I did not find the time by now - too...
by bjoern
30.07.2014, 13:00
Forum: Cm2 MembraneEditor
Topic: Questions
Replies: 10
Views: 54530

Re: Questions

What about more complex formes of membranes like fusion events of lipsomes and membranes? This is already possible. Just use the function "Add secondary bilayer to the model". The button you will find in the toolbar. With this option, you can add as many membranes or bilayers as you wish....
by bjoern
30.07.2014, 12:27
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Bug Report MembraneEditor
Replies: 3
Views: 27319

Re: Bug Report MembraneEditor

Hi Philipp! Yes, you are right - the former version of the VesicleBuilder did not work for micelles. I just uploaded the new version of the VesicleBuilder which supports also to pack only the external layer. https://www.cellmicrocosmos.org/Cmforum/viewtopic.php?f=35&t=676 Just activate fill only...
by bjoern
23.04.2014, 10:40
Forum: CmCM Cell Modelling
Topic: Cell Modelling SS2014
Replies: 1
Views: 14618

Tasks

Anastasia Reimer (5 CP, finished ) Cell Model with Icy Mohammad Rafi Noori (5 CP, finished ) Leap Motion Raphael Morisco, Semia Chouchane & Tobias Namnieks (5 CP, finished ) Network Layouts Optimization for CELLmicrocosmos 4 PathwayIntegration Sebastian Goldenberg (5 CP, finished ) Text Mining
by bjoern
23.04.2014, 10:37
Forum: CmCM Cell Modelling
Topic: Cell Modelling SS2014
Replies: 1
Views: 14618

Cell Modelling SS2014

Here, the new Blender tutorial will be uploaded. This semester we will only focus on the modeling part. However, the tutorials are updated for Blender version 2.7. In addtion, the tasks for this semester's project are listed here. Blender Tutorials Blender_Tutorial_SS2014__1_0.pdf Tutorial 30.04.201...
by bjoern
19.04.2014, 15:18
Forum: Multidimensional Cell Visualization SS 2014
Topic: Talks/Time Schedule MCV SS 2014
Replies: 0
Views: 21853

Talks/Time Schedule MCV SS 2014

Interdisciplinary Cell Visualization and Modeling SS2014 Each Friday at 10:00 c.t. in D5-113 09/11.04. 1. Introduction: Multidimensional Cell Visualization + Lectures 16.04. Topics 23.04. Blender Intro I 30.04. Blender Intro II 07.05. cancelled 14.05. Double Feature Special Microscopy Techniques (R...
by bjoern
17.04.2014, 16:58
Forum: PROJECTnews
Topic: Forum upgrade 17.04.2014
Replies: 0
Views: 29822

Forum upgrade 17.04.2014

The forum was updated from phpBB 3.0.11 to 3.0.12. A new version of the Ad Infintium style was installed: https://www.phpbb.com/customise/db/style/ad_infinitum_2/ It was ported to all actual sub forums. The ReIMG Image Resizer was installed: https://www.phpbb.com/customise/db/mod/reimg_image_resizer...
by bjoern
17.04.2014, 16:04
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Mailing List Archive (Release Updates)
Replies: 7
Views: 38024

CELLmicrocosmos 2.2.2_1 MembraneEditor Minor Release

17.03.2014 CELLmicrocosmos 2.2.2_1 MembraneEditor Minor Release Dear Colleagues and Friends, the next minor release is out now: CELLmicrocosmos 2.2.2_1 MembraneEditor Minor Release Molecule Alignment and Performance Update, Bugfixes (17.03.2014) Cm2_2_2_1_release.jpg Shortly, here the number of imp...
by bjoern
17.04.2014, 15:58
Forum: Cm2.2 MembraneEditor (CmME)
Topic: Mailing List Archive (Release Updates)
Replies: 7
Views: 38024

CELLmicrocosmos 2.2.2 MembraneEditor Release & VizBi 2014 ..

29.01.2014 CELLmicrocosmos 2.2.2 MembraneEditor Release & VizBi 2014 Workshop Announcement Dear Colleagues and Friends, it is about time, now it is out: CELLmicrocosmos 2.2.2 MembraneEditor Release Cm2_2_2_release.jpg The open source tool for modeling PDB membranes based on Membrane Packing Alg...
by bjoern
29.01.2014, 20:54
Forum: Cm2.2 MembraneEditor (CmME)
Topic: FAQ
Replies: 9
Views: 52381

Java 3D Validation Error

Java 3D Validation Error: if I start the MembraneEditor, the following error message is shown and the application does not start: Cm2_2_2_validate_error.JPG Note: This screenshot is taken from Linux, but I saw the same error (maybe with a little bit different sounding) occuring on Windows 8! The ce...
by bjoern
15.01.2014, 15:39
Forum: CmCM Cell Modelling
Topic: Cell Modelling WS2013-14
Replies: 2
Views: 18214

Visualization Lab Time Table January 2014

DI
10 - 13 Fazel & Mohammed
13 - 16 Gökhan & Plamen

MI
12 - 14 Ann-Kathrin & Nils
14 - 16 CmCM Group
by bjoern
15.01.2014, 15:38
Forum: CmCM Cell Modelling
Topic: Cell Modelling WS2013-14
Replies: 2
Views: 18214

CmCM Teams

Plamen & Gökhan (10 CP), finished Dune Environment with Grass, Water Running Mouse Mouse Head Fazel & Mohammed (10CP), finished Brain Neuronal Net MES Neuron (from Nils) MOL Cell/PLasma(?) Membrane Julia & Paul (5 CP), finished MOL Intracellular Membrane Tree Ann-Kathrin & Nils (10 ...