This forum attends all concerns of the Java-based MembraneEditor created for the CELLmicrocosmos 2 project.
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bjoern
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Releases

Post by bjoern » 19.07.2006, 13:17

Here you can find all bugfixes of the actual Cm2-download-version.

The project is located at:
http://www.bsdsign.de/CELLmicrocosmos/i ... m2_results
Last edited by bjoern on 19.07.2006, 22:18, edited 2 times in total.

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bjoern
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Post by bjoern » 19.07.2006, 13:21

Release 1.01 31.08.2006 released

Bugfixes:
  • The porin-node of the tree does not fail if you click on the component-node and shows the Properties-section correctly.

    Now you can use extracted PDB-files from the HIC-UP-page (http://xray.bmc.uu.se/hicup/) without obtaining buggy results. This is especially usefull if you want to integrate more different lipids into the membrane than one (e.g. the PDBs: 'pc2_exp', '3pe_exp', 'psf_msd', 'dlp_msd').

    If you use other lipids than the 'pc2_exp.PDB', the program still works. Please refer to 'gui/MembranModel.java' of the project if you want to integrate another lipid.

    The program does not fail if the PDB contains no description and shows instead of that the info 'none' in 'Properties'.

    If a date in the PDB does not exist, no date or wrong descrption instead of that is shown anymore in 'Properties'.

    The 'Properties'-dialog shows now in addition the actual used lipid and its RotationMatrix if you click onto the membrane in the tree-view.

    The size of the lipids in the 'Protein Preview' is now related to the maxLength of the actual lipid. So the scale factor is now connected to the used lipid and does not only work with 'pc2_exp.PDB'.

    If more bigger PDB-files are used for the PDB of a generated membrane, the PDBWriter does not fail.

    The Statistics does not cause an exception when more than 10 colors have to be used.

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