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PDB: 3D Structure Prediction

Posted: 11.06.2007, 16:30
by bjoern
Here you will find some links concerning the prediction of 3d structures of proteins.

Posted: 11.06.2007, 16:33
by bjoern
  • A central portal for searching for predicted models.
    :arrow: PMP is developed by the Computational Structural Biology Group at the Swiss Institute of Bioinformatics (SIB) and the Biozentrum of the University of Basel.
  • A database containing more than 3 million predicted PDB models, slow search, but nice correlation between PDB and UniProt.
    :arrow: MODBASE, a database of annotated comparative protein structure models and associated resources. Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Marti-Renom, Fred P. Davis, Andrej Sali Nucleic Acids Research 37, D347-D354, 2009.
  • A large database of protein alignments commited by the Swiss PDB Viewer (Deep View).
    :arrow: Arnold K., Bordoli L., Kopp J., and Schwede T. (2006). The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling. Bioinformatics, 22,195-201.
  • A small outdated page from 2006 of predicted models.
    :arrow: Castrignanò T, De Meo PD, Cozzetto D, Talamo IG, Tramontano A. (2006). The PMDB Protein Model Database. Nucleic Acids Research, 34: D306-D309.

Re: PDB: 3D Structure Prediction

Posted: 07.07.2010, 09:43
by gunther