APL@Voro

Release 3.1: forthcoming

Release 3.0

• Analysis of Gromacs-generated trajectories
• Reading .pdb and .trr/xtc files created for lipid bilayers
• Calculating Voronoi diagrams for different atom selections
• Calculate the area per lipid and membrane thickness
• Access bilayer features for single lipids

What is it?

about

algorithms

screenshots

APL@Voro@YouTube!

• Generate 2D and 3D plots
• Analyze lipids' neighbourhood
• Use the tool in combination with the MembraneEditor (more in the Cm2 APL@Voro manual section)
• Read the Publication: JCIM 53(11):2908-25, 2013.

Downloads

New Repository with versions 3.1+ (forthcoming, bitbucket).

Original Repository with source code and compilations for Linux distributions and Mac OS X up to version 3.02 (Source Forge).

Team

Maintainer since 2018:
Martin Kern, Uni. of Konstanz

Original Developer until 2018:
Gunther Lukat, Bielefeld Uni.

Supervisors:
Björn Sommer, Uni. of Konstanz
Jens Krüger, Uni. of Tübingen

Note

APL@Voro is an independent tool not sharing source code with Cm2. But it was developed by Gunther Lukat during his diploma thesis in context of the Cm2 project. As the original website is down, we host its content now here.