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org.jmol.* |
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org.jmol.adapter.smarter.SmarterJmolAdapter | ||
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public static final java.lang.String |
PATH_KEY |
".PATH" |
org.jmol.api.JmolAdapter | ||
---|---|---|
public static final short |
ORDER_AROMATIC |
4 |
public static final short |
ORDER_COVALENT_DOUBLE |
2 |
public static final short |
ORDER_COVALENT_SINGLE |
1 |
public static final short |
ORDER_COVALENT_TRIPLE |
3 |
public static final short |
ORDER_HBOND |
64 |
public static final short |
ORDER_PARTIAL01 |
1024 |
public static final short |
ORDER_PARTIAL12 |
2048 |
public static final short |
ORDER_STEREO_FAR |
18 |
public static final short |
ORDER_STEREO_NEAR |
9 |
org.jmol.g3d.Font3D | ||
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public static final int |
FONT_FACE_MONO |
2 |
public static final int |
FONT_FACE_SANS |
0 |
public static final int |
FONT_FACE_SERIF |
1 |
public static final int |
FONT_STYLE_BOLD |
1 |
public static final int |
FONT_STYLE_BOLDITALIC |
3 |
public static final int |
FONT_STYLE_ITALIC |
2 |
public static final int |
FONT_STYLE_PLAIN |
0 |
org.jmol.g3d.Graphics3D | ||
---|---|---|
public static final short |
AQUA |
9 |
public static final short |
BLACK |
4 |
public static final short |
BLUE |
7 |
public static final short |
CYAN |
9 |
public static final byte |
ENDCAPS_FLAT |
2 |
public static final byte |
ENDCAPS_NONE |
0 |
public static final byte |
ENDCAPS_OPEN |
1 |
public static final byte |
ENDCAPS_SPHERICAL |
3 |
public static final short |
FUCHSIA |
20 |
public static final int |
GEODESIC_START_NEIGHBOR_COUNT |
5 |
public static final int |
GEODESIC_START_VERTEX_COUNT |
12 |
public static final short |
GOLD |
23 |
public static final short |
GRAY |
12 |
public static final short |
GREEN |
11 |
public static final int |
HIGHEST_GEODESIC_LEVEL |
3 |
public static final short |
HOTPINK |
22 |
public static final short |
LIGHTGRAY |
13 |
public static final short |
LIME |
14 |
public static final short |
MAGENTA |
20 |
public static final short |
MAROON |
15 |
public static final short |
NAVY |
16 |
public static final short |
NULL_COLIX |
0 |
public static final short |
OLIVE |
17 |
public static final short |
OPAQUE |
2 |
public static final short |
ORANGE |
5 |
public static final short |
PINK |
6 |
public static final short |
PURPLE |
18 |
public static final short |
RED |
10 |
public static final byte |
shadeLast |
63 |
public static final byte |
shadeMax |
64 |
public static final short |
SILVER |
13 |
public static final short |
SPECIAL_COLIX_MAX |
4 |
public static final short |
TEAL |
19 |
public static final short |
TRANSLUCENT |
1 |
public static final short |
UNRECOGNIZED |
3 |
public static final short |
WHITE |
8 |
public static final short |
YELLOW |
21 |
org.jmol.g3d.Xyzd | ||
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public static final int |
GB |
32768 |
public static final long |
GB4 |
-9223231297218904064L |
public static final int |
GBZO |
34768 |
public static final long |
GBZO4 |
-8660272753731926064L |
public static final long |
LGB |
32768L |
public static final long |
LMASK |
16383L |
public static final long |
LOV |
16384L |
public static final long |
LZO |
2000L |
public static final int |
MASK |
16383 |
public static final long |
MASK3 |
70365522903039L |
public static final long |
MASK4 |
4611474908973580287L |
public static final int |
MAX |
14383 |
public static final int |
MIN |
-2000 |
public static final long |
NaN |
-9223372036854775808L |
public static final int |
OV |
16384 |
public static final long |
OV3 |
70369817935872L |
public static final long |
OV4 |
4611756388245323776L |
public static final int |
ZO |
2000 |
public static final long |
ZO3 |
8590065666000L |
public static final long |
ZO4 |
562958543486978000L |
org.jmol.smiles.SmilesAtom | ||
---|---|---|
public static final java.lang.String |
CHIRALITY_ALLENE |
"AL" |
public static final java.lang.String |
CHIRALITY_OCTAHEDRAL |
"OH" |
public static final java.lang.String |
CHIRALITY_SQUARE_PLANAR |
"SP" |
public static final java.lang.String |
CHIRALITY_TETRAHEDRAL |
"TH" |
public static final java.lang.String |
CHIRALITY_TRIGONAL_BIPYRAMIDAL |
"TB" |
public static final java.lang.String |
DEFAULT_CHIRALITY |
"" |
org.jmol.smiles.SmilesBond | ||
---|---|---|
public static final char |
CODE_AROMATIC |
58 |
public static final char |
CODE_DIRECTIONAL_1 |
47 |
public static final char |
CODE_DIRECTIONAL_2 |
92 |
public static final char |
CODE_DOUBLE |
61 |
public static final char |
CODE_NONE |
46 |
public static final char |
CODE_SINGLE |
45 |
public static final char |
CODE_TRIPLE |
35 |
public static final int |
TYPE_AROMATIC |
4 |
public static final int |
TYPE_DIRECTIONAL_1 |
5 |
public static final int |
TYPE_DIRECTIONAL_2 |
6 |
public static final int |
TYPE_DOUBLE |
2 |
public static final int |
TYPE_NONE |
0 |
public static final int |
TYPE_SINGLE |
1 |
public static final int |
TYPE_TRIPLE |
3 |
public static final int |
TYPE_UNKOWN |
-1 |
org.jmol.viewer.JmolConstants | ||
---|---|---|
public static final int |
argbShapelyBackbone |
-4671304 |
public static final int |
argbShapelyDefault |
-65281 |
public static final int |
argbShapelySpecial |
-10616738 |
public static final byte |
ATOMID_ALPHA_CARBON |
2 |
public static final int |
ATOMID_ALPHA_ONLY_MASK |
4 |
public static final byte |
ATOMID_AMINO_NITROGEN |
1 |
public static final int |
ATOMID_BACKBONE_MAX |
64 |
public static final byte |
ATOMID_C2 |
65 |
public static final byte |
ATOMID_C3_PRIME |
8 |
public static final byte |
ATOMID_C4 |
67 |
public static final byte |
ATOMID_C5 |
68 |
public static final byte |
ATOMID_C5_PRIME |
6 |
public static final byte |
ATOMID_C5M |
77 |
public static final byte |
ATOMID_C6 |
69 |
public static final byte |
ATOMID_C8 |
72 |
public static final byte |
ATOMID_CARBONYL_CARBON |
3 |
public static final byte |
ATOMID_CARBONYL_OXYGEN |
40 |
public static final int |
ATOMID_DISTINGUISHING_ATOM_MAX |
32 |
public static final byte |
ATOMID_H3T_TERMINUS |
59 |
public static final byte |
ATOMID_H5T_TERMINUS |
45 |
public static final byte |
ATOMID_N1 |
64 |
public static final byte |
ATOMID_N2 |
75 |
public static final byte |
ATOMID_N3 |
66 |
public static final byte |
ATOMID_N4 |
74 |
public static final byte |
ATOMID_N6 |
76 |
public static final byte |
ATOMID_N7 |
71 |
public static final byte |
ATOMID_N9 |
73 |
public static final int |
ATOMID_NUCLEIC_MASK |
4064 |
public static final byte |
ATOMID_NUCLEIC_PHOSPHORUS |
12 |
public static final byte |
ATOMID_NUCLEIC_WING |
69 |
public static final byte |
ATOMID_O1 |
41 |
public static final byte |
ATOMID_O2 |
70 |
public static final byte |
ATOMID_O3_PRIME |
9 |
public static final byte |
ATOMID_O4 |
79 |
public static final byte |
ATOMID_O5_PRIME |
5 |
public static final byte |
ATOMID_O5T_TERMINUS |
46 |
public static final byte |
ATOMID_O6 |
78 |
public static final int |
ATOMID_PHOSPHORUS_ONLY_MASK |
4096 |
public static final int |
ATOMID_PROTEIN_MASK |
14 |
public static final byte |
ATOMID_RNA_O2PRIME |
50 |
public static final byte |
ATOMID_S4 |
80 |
public static final byte |
ATOMID_TERMINATING_OXT |
32 |
public static final int |
AXES_DEFAULT_FONTSIZE |
14 |
public static final short |
BOND_ALL_MASK |
-1 |
public static final short |
BOND_AROMATIC |
5 |
public static final short |
BOND_AROMATIC_MASK |
4 |
public static final short |
BOND_COVALENT_DOUBLE |
2 |
public static final short |
BOND_COVALENT_MASK |
3 |
public static final short |
BOND_COVALENT_SINGLE |
1 |
public static final short |
BOND_COVALENT_TRIPLE |
3 |
public static final short |
BOND_H_MINUS_3 |
384 |
public static final short |
BOND_H_MINUS_4 |
448 |
public static final short |
BOND_H_NUCLEOTIDE |
512 |
public static final short |
BOND_H_PLUS_2 |
128 |
public static final short |
BOND_H_PLUS_3 |
192 |
public static final short |
BOND_H_PLUS_4 |
256 |
public static final short |
BOND_H_PLUS_5 |
320 |
public static final short |
BOND_H_REGULAR |
64 |
public static final short |
BOND_HBOND_SHIFT |
6 |
public static final short |
BOND_HYDROGEN_MASK |
960 |
public static final short |
BOND_PARTIAL01 |
1024 |
public static final short |
BOND_PARTIAL12 |
2048 |
public static final short |
BOND_STEREO_FAR |
18 |
public static final short |
BOND_STEREO_MASK |
24 |
public static final short |
BOND_STEREO_NEAR |
9 |
public static final short |
BOND_SULFUR_MASK |
32 |
public static final java.lang.String |
copyright |
"(C) 2005 The Jmol Development Team" |
public static final java.lang.String |
cvsDate |
"$Date: 2006/02/16 10:53:25 $" |
public static final java.lang.String |
DEFAULT_FONTFACE |
"SansSerif" |
public static final java.lang.String |
DEFAULT_FONTSTYLE |
"Plain" |
public static final int |
FORMAL_CHARGE_INDEX_WHITE |
4 |
public static final int |
FORMAL_CHARGE_MAX |
7 |
public static final int |
FORMAL_CHARGE_MIN |
-4 |
public static final int |
FORMAL_CHARGE_RANGE_SIZE |
12 |
public static final short |
GROUPID_AMINO_MAX |
23 |
public static final int |
GROUPID_GUANINE |
26 |
public static final int |
GROUPID_GUANINE_1_LAST |
46 |
public static final int |
GROUPID_GUANINE_1_MIN |
40 |
public static final int |
GROUPID_GUANINE_2_LAST |
57 |
public static final int |
GROUPID_GUANINE_2_MIN |
55 |
public static final int |
GROUPID_PLUS_GUANINE |
27 |
public static final int |
GROUPID_PROLINE |
15 |
public static final int |
GROUPID_PURINE_LAST |
29 |
public static final int |
GROUPID_PURINE_MIN |
24 |
public static final int |
GROUPID_PYRIMIDINE_LAST |
35 |
public static final int |
GROUPID_PYRIMIDINE_MIN |
30 |
public static final short |
GROUPID_SHAPELY_MAX |
36 |
public static final int |
LABEL_DEFAULT_FONTSIZE |
13 |
public static final int |
LABEL_DEFAULT_X_OFFSET |
4 |
public static final int |
LABEL_DEFAULT_Y_OFFSET |
4 |
public static final int |
LABEL_MAXIMUM_FONTSIZE |
63 |
public static final int |
LABEL_MINIMUM_FONTSIZE |
6 |
public static final short |
madMultipleBondSmallMaximum |
500 |
public static final short |
MAR_DELETED |
-32768 |
public static final int |
MAXIMUM_AUTO_BOND_COUNT |
20 |
public static final int |
MEASURE_DEFAULT_FONTSIZE |
15 |
public static final int |
MOUSE_DELETE |
4 |
public static final int |
MOUSE_MEASURE |
5 |
public static final int |
MOUSE_PICK |
3 |
public static final int |
MOUSE_POPUP_MENU |
8 |
public static final int |
MOUSE_ROTATE |
0 |
public static final int |
MOUSE_ROTATE_Z |
6 |
public static final int |
MOUSE_SLAB_PLANE |
7 |
public static final int |
MOUSE_XLATE |
2 |
public static final int |
MOUSE_ZOOM |
1 |
public static final byte |
MULTIBOND_ALWAYS |
3 |
public static final byte |
MULTIBOND_NEVER |
0 |
public static final byte |
MULTIBOND_SMALL |
2 |
public static final byte |
MULTIBOND_WIREFRAME |
1 |
public static final boolean |
officialRelease |
false |
public static final int |
PARTIAL_CHARGE_RANGE_SIZE |
31 |
public static final int |
PICKING_ANGLE |
4 |
public static final int |
PICKING_BOND |
9 |
public static final int |
PICKING_CENTER |
7 |
public static final int |
PICKING_COORD |
8 |
public static final int |
PICKING_DISTANCE |
2 |
public static final int |
PICKING_IDENT |
1 |
public static final int |
PICKING_LABEL |
6 |
public static final int |
PICKING_MONITOR |
3 |
public static final int |
PICKING_OFF |
0 |
public static final int |
PICKING_SELECT_ATOM |
10 |
public static final int |
PICKING_SELECT_CHAIN |
12 |
public static final int |
PICKING_SELECT_GROUP |
11 |
public static final int |
PICKING_TORSION |
5 |
public static final byte |
PROTEIN_STRUCTURE_DNA |
4 |
public static final byte |
PROTEIN_STRUCTURE_HELIX |
3 |
public static final byte |
PROTEIN_STRUCTURE_NONE |
0 |
public static final byte |
PROTEIN_STRUCTURE_RNA |
5 |
public static final byte |
PROTEIN_STRUCTURE_SHEET |
2 |
public static final byte |
PROTEIN_STRUCTURE_TURN |
1 |
public static final int |
SHAPE_AXES |
16 |
public static final int |
SHAPE_BACKBONE |
8 |
public static final int |
SHAPE_BALLS |
0 |
public static final int |
SHAPE_BBCAGE |
17 |
public static final int |
SHAPE_CARTOON |
10 |
public static final int |
SHAPE_DOTS |
7 |
public static final int |
SHAPE_ECHO |
20 |
public static final int |
SHAPE_FRANK |
19 |
public static final int |
SHAPE_HOVER |
21 |
public static final int |
SHAPE_HSTICKS |
2 |
public static final int |
SHAPE_ISOSURFACE |
25 |
public static final int |
SHAPE_LABELS |
4 |
public static final int |
SHAPE_MAX |
27 |
public static final int |
SHAPE_MEASURES |
6 |
public static final int |
SHAPE_MESHRIBBON |
12 |
public static final int |
SHAPE_MIN_SELECTION_INDEPENDENT |
16 |
public static final int |
SHAPE_PMESH |
22 |
public static final int |
SHAPE_POLYHEDRA |
23 |
public static final int |
SHAPE_PRUEBA |
26 |
public static final int |
SHAPE_RIBBONS |
13 |
public static final int |
SHAPE_ROCKETS |
14 |
public static final int |
SHAPE_SASURFACE |
24 |
public static final int |
SHAPE_SSSTICKS |
3 |
public static final int |
SHAPE_STARS |
15 |
public static final int |
SHAPE_STICKS |
1 |
public static final int |
SHAPE_STRANDS |
11 |
public static final int |
SHAPE_TRACE |
9 |
public static final int |
SHAPE_UCCAGE |
18 |
public static final int |
SHAPE_VECTORS |
5 |
public static final int |
STEREO_DOUBLE |
1 |
public static final int |
STEREO_NONE |
0 |
public static final int |
STEREO_REDBLUE |
3 |
public static final int |
STEREO_REDCYAN |
2 |
public static final int |
STEREO_REDGREEN |
4 |
public static final java.lang.String |
version |
"10.00.47" |
org.openscience.* |
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org.openscience.jmol.app.DisplayPanel | ||
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public static final int |
X_AXIS |
1 |
public static final int |
Y_AXIS |
2 |
public static final int |
Z_AXIS |
3 |
org.openscience.jmol.app.FileDropper | ||
---|---|---|
public static final java.lang.String |
FD_PROPERTY_FILENAME |
"filename" |
public static final java.lang.String |
FD_PROPERTY_INLINE |
"inline" |
org.openscience.jmol.app.Jmol | ||
---|---|---|
public static final java.lang.String |
chemFileProperty |
"chemFile" |
org.openscience.jmol.app.PngEncoder | ||
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public static final boolean |
ENCODE_ALPHA |
true |
public static final int |
FILTER_LAST |
2 |
public static final int |
FILTER_NONE |
0 |
public static final int |
FILTER_SUB |
1 |
public static final int |
FILTER_UP |
2 |
public static final boolean |
NO_ALPHA |
false |
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