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| org.jmol.* | 
|---|
| org.jmol.adapter.smarter.SmarterJmolAdapter | ||
|---|---|---|
public static final java.lang.String | 
PATH_KEY | 
".PATH" | 
| org.jmol.api.JmolAdapter | ||
|---|---|---|
public static final short | 
ORDER_AROMATIC | 
4 | 
public static final short | 
ORDER_COVALENT_DOUBLE | 
2 | 
public static final short | 
ORDER_COVALENT_SINGLE | 
1 | 
public static final short | 
ORDER_COVALENT_TRIPLE | 
3 | 
public static final short | 
ORDER_HBOND | 
64 | 
public static final short | 
ORDER_PARTIAL01 | 
1024 | 
public static final short | 
ORDER_PARTIAL12 | 
2048 | 
public static final short | 
ORDER_STEREO_FAR | 
18 | 
public static final short | 
ORDER_STEREO_NEAR | 
9 | 
| org.jmol.g3d.Font3D | ||
|---|---|---|
public static final int | 
FONT_FACE_MONO | 
2 | 
public static final int | 
FONT_FACE_SANS | 
0 | 
public static final int | 
FONT_FACE_SERIF | 
1 | 
public static final int | 
FONT_STYLE_BOLD | 
1 | 
public static final int | 
FONT_STYLE_BOLDITALIC | 
3 | 
public static final int | 
FONT_STYLE_ITALIC | 
2 | 
public static final int | 
FONT_STYLE_PLAIN | 
0 | 
| org.jmol.g3d.Graphics3D | ||
|---|---|---|
public static final short | 
AQUA | 
9 | 
public static final short | 
BLACK | 
4 | 
public static final short | 
BLUE | 
7 | 
public static final short | 
CYAN | 
9 | 
public static final byte | 
ENDCAPS_FLAT | 
2 | 
public static final byte | 
ENDCAPS_NONE | 
0 | 
public static final byte | 
ENDCAPS_OPEN | 
1 | 
public static final byte | 
ENDCAPS_SPHERICAL | 
3 | 
public static final short | 
FUCHSIA | 
20 | 
public static final int | 
GEODESIC_START_NEIGHBOR_COUNT | 
5 | 
public static final int | 
GEODESIC_START_VERTEX_COUNT | 
12 | 
public static final short | 
GOLD | 
23 | 
public static final short | 
GRAY | 
12 | 
public static final short | 
GREEN | 
11 | 
public static final int | 
HIGHEST_GEODESIC_LEVEL | 
3 | 
public static final short | 
HOTPINK | 
22 | 
public static final short | 
LIGHTGRAY | 
13 | 
public static final short | 
LIME | 
14 | 
public static final short | 
MAGENTA | 
20 | 
public static final short | 
MAROON | 
15 | 
public static final short | 
NAVY | 
16 | 
public static final short | 
NULL_COLIX | 
0 | 
public static final short | 
OLIVE | 
17 | 
public static final short | 
OPAQUE | 
2 | 
public static final short | 
ORANGE | 
5 | 
public static final short | 
PINK | 
6 | 
public static final short | 
PURPLE | 
18 | 
public static final short | 
RED | 
10 | 
public static final byte | 
shadeLast | 
63 | 
public static final byte | 
shadeMax | 
64 | 
public static final short | 
SILVER | 
13 | 
public static final short | 
SPECIAL_COLIX_MAX | 
4 | 
public static final short | 
TEAL | 
19 | 
public static final short | 
TRANSLUCENT | 
1 | 
public static final short | 
UNRECOGNIZED | 
3 | 
public static final short | 
WHITE | 
8 | 
public static final short | 
YELLOW | 
21 | 
| org.jmol.g3d.Xyzd | ||
|---|---|---|
public static final int | 
GB | 
32768 | 
public static final long | 
GB4 | 
-9223231297218904064L | 
public static final int | 
GBZO | 
34768 | 
public static final long | 
GBZO4 | 
-8660272753731926064L | 
public static final long | 
LGB | 
32768L | 
public static final long | 
LMASK | 
16383L | 
public static final long | 
LOV | 
16384L | 
public static final long | 
LZO | 
2000L | 
public static final int | 
MASK | 
16383 | 
public static final long | 
MASK3 | 
70365522903039L | 
public static final long | 
MASK4 | 
4611474908973580287L | 
public static final int | 
MAX | 
14383 | 
public static final int | 
MIN | 
-2000 | 
public static final long | 
NaN | 
-9223372036854775808L | 
public static final int | 
OV | 
16384 | 
public static final long | 
OV3 | 
70369817935872L | 
public static final long | 
OV4 | 
4611756388245323776L | 
public static final int | 
ZO | 
2000 | 
public static final long | 
ZO3 | 
8590065666000L | 
public static final long | 
ZO4 | 
562958543486978000L | 
| org.jmol.smiles.SmilesAtom | ||
|---|---|---|
public static final java.lang.String | 
CHIRALITY_ALLENE | 
"AL" | 
public static final java.lang.String | 
CHIRALITY_OCTAHEDRAL | 
"OH" | 
public static final java.lang.String | 
CHIRALITY_SQUARE_PLANAR | 
"SP" | 
public static final java.lang.String | 
CHIRALITY_TETRAHEDRAL | 
"TH" | 
public static final java.lang.String | 
CHIRALITY_TRIGONAL_BIPYRAMIDAL | 
"TB" | 
public static final java.lang.String | 
DEFAULT_CHIRALITY | 
"" | 
| org.jmol.smiles.SmilesBond | ||
|---|---|---|
public static final char | 
CODE_AROMATIC | 
58 | 
public static final char | 
CODE_DIRECTIONAL_1 | 
47 | 
public static final char | 
CODE_DIRECTIONAL_2 | 
92 | 
public static final char | 
CODE_DOUBLE | 
61 | 
public static final char | 
CODE_NONE | 
46 | 
public static final char | 
CODE_SINGLE | 
45 | 
public static final char | 
CODE_TRIPLE | 
35 | 
public static final int | 
TYPE_AROMATIC | 
4 | 
public static final int | 
TYPE_DIRECTIONAL_1 | 
5 | 
public static final int | 
TYPE_DIRECTIONAL_2 | 
6 | 
public static final int | 
TYPE_DOUBLE | 
2 | 
public static final int | 
TYPE_NONE | 
0 | 
public static final int | 
TYPE_SINGLE | 
1 | 
public static final int | 
TYPE_TRIPLE | 
3 | 
public static final int | 
TYPE_UNKOWN | 
-1 | 
| org.jmol.viewer.JmolConstants | ||
|---|---|---|
public static final int | 
argbShapelyBackbone | 
-4671304 | 
public static final int | 
argbShapelyDefault | 
-65281 | 
public static final int | 
argbShapelySpecial | 
-10616738 | 
public static final byte | 
ATOMID_ALPHA_CARBON | 
2 | 
public static final int | 
ATOMID_ALPHA_ONLY_MASK | 
4 | 
public static final byte | 
ATOMID_AMINO_NITROGEN | 
1 | 
public static final int | 
ATOMID_BACKBONE_MAX | 
64 | 
public static final byte | 
ATOMID_C2 | 
65 | 
public static final byte | 
ATOMID_C3_PRIME | 
8 | 
public static final byte | 
ATOMID_C4 | 
67 | 
public static final byte | 
ATOMID_C5 | 
68 | 
public static final byte | 
ATOMID_C5_PRIME | 
6 | 
public static final byte | 
ATOMID_C5M | 
77 | 
public static final byte | 
ATOMID_C6 | 
69 | 
public static final byte | 
ATOMID_C8 | 
72 | 
public static final byte | 
ATOMID_CARBONYL_CARBON | 
3 | 
public static final byte | 
ATOMID_CARBONYL_OXYGEN | 
40 | 
public static final int | 
ATOMID_DISTINGUISHING_ATOM_MAX | 
32 | 
public static final byte | 
ATOMID_H3T_TERMINUS | 
59 | 
public static final byte | 
ATOMID_H5T_TERMINUS | 
45 | 
public static final byte | 
ATOMID_N1 | 
64 | 
public static final byte | 
ATOMID_N2 | 
75 | 
public static final byte | 
ATOMID_N3 | 
66 | 
public static final byte | 
ATOMID_N4 | 
74 | 
public static final byte | 
ATOMID_N6 | 
76 | 
public static final byte | 
ATOMID_N7 | 
71 | 
public static final byte | 
ATOMID_N9 | 
73 | 
public static final int | 
ATOMID_NUCLEIC_MASK | 
4064 | 
public static final byte | 
ATOMID_NUCLEIC_PHOSPHORUS | 
12 | 
public static final byte | 
ATOMID_NUCLEIC_WING | 
69 | 
public static final byte | 
ATOMID_O1 | 
41 | 
public static final byte | 
ATOMID_O2 | 
70 | 
public static final byte | 
ATOMID_O3_PRIME | 
9 | 
public static final byte | 
ATOMID_O4 | 
79 | 
public static final byte | 
ATOMID_O5_PRIME | 
5 | 
public static final byte | 
ATOMID_O5T_TERMINUS | 
46 | 
public static final byte | 
ATOMID_O6 | 
78 | 
public static final int | 
ATOMID_PHOSPHORUS_ONLY_MASK | 
4096 | 
public static final int | 
ATOMID_PROTEIN_MASK | 
14 | 
public static final byte | 
ATOMID_RNA_O2PRIME | 
50 | 
public static final byte | 
ATOMID_S4 | 
80 | 
public static final byte | 
ATOMID_TERMINATING_OXT | 
32 | 
public static final int | 
AXES_DEFAULT_FONTSIZE | 
14 | 
public static final short | 
BOND_ALL_MASK | 
-1 | 
public static final short | 
BOND_AROMATIC | 
5 | 
public static final short | 
BOND_AROMATIC_MASK | 
4 | 
public static final short | 
BOND_COVALENT_DOUBLE | 
2 | 
public static final short | 
BOND_COVALENT_MASK | 
3 | 
public static final short | 
BOND_COVALENT_SINGLE | 
1 | 
public static final short | 
BOND_COVALENT_TRIPLE | 
3 | 
public static final short | 
BOND_H_MINUS_3 | 
384 | 
public static final short | 
BOND_H_MINUS_4 | 
448 | 
public static final short | 
BOND_H_NUCLEOTIDE | 
512 | 
public static final short | 
BOND_H_PLUS_2 | 
128 | 
public static final short | 
BOND_H_PLUS_3 | 
192 | 
public static final short | 
BOND_H_PLUS_4 | 
256 | 
public static final short | 
BOND_H_PLUS_5 | 
320 | 
public static final short | 
BOND_H_REGULAR | 
64 | 
public static final short | 
BOND_HBOND_SHIFT | 
6 | 
public static final short | 
BOND_HYDROGEN_MASK | 
960 | 
public static final short | 
BOND_PARTIAL01 | 
1024 | 
public static final short | 
BOND_PARTIAL12 | 
2048 | 
public static final short | 
BOND_STEREO_FAR | 
18 | 
public static final short | 
BOND_STEREO_MASK | 
24 | 
public static final short | 
BOND_STEREO_NEAR | 
9 | 
public static final short | 
BOND_SULFUR_MASK | 
32 | 
public static final java.lang.String | 
copyright | 
"(C) 2005 The Jmol Development Team" | 
public static final java.lang.String | 
cvsDate | 
"$Date: 2006/02/16 10:53:25 $" | 
public static final java.lang.String | 
DEFAULT_FONTFACE | 
"SansSerif" | 
public static final java.lang.String | 
DEFAULT_FONTSTYLE | 
"Plain" | 
public static final int | 
FORMAL_CHARGE_INDEX_WHITE | 
4 | 
public static final int | 
FORMAL_CHARGE_MAX | 
7 | 
public static final int | 
FORMAL_CHARGE_MIN | 
-4 | 
public static final int | 
FORMAL_CHARGE_RANGE_SIZE | 
12 | 
public static final short | 
GROUPID_AMINO_MAX | 
23 | 
public static final int | 
GROUPID_GUANINE | 
26 | 
public static final int | 
GROUPID_GUANINE_1_LAST | 
46 | 
public static final int | 
GROUPID_GUANINE_1_MIN | 
40 | 
public static final int | 
GROUPID_GUANINE_2_LAST | 
57 | 
public static final int | 
GROUPID_GUANINE_2_MIN | 
55 | 
public static final int | 
GROUPID_PLUS_GUANINE | 
27 | 
public static final int | 
GROUPID_PROLINE | 
15 | 
public static final int | 
GROUPID_PURINE_LAST | 
29 | 
public static final int | 
GROUPID_PURINE_MIN | 
24 | 
public static final int | 
GROUPID_PYRIMIDINE_LAST | 
35 | 
public static final int | 
GROUPID_PYRIMIDINE_MIN | 
30 | 
public static final short | 
GROUPID_SHAPELY_MAX | 
36 | 
public static final int | 
LABEL_DEFAULT_FONTSIZE | 
13 | 
public static final int | 
LABEL_DEFAULT_X_OFFSET | 
4 | 
public static final int | 
LABEL_DEFAULT_Y_OFFSET | 
4 | 
public static final int | 
LABEL_MAXIMUM_FONTSIZE | 
63 | 
public static final int | 
LABEL_MINIMUM_FONTSIZE | 
6 | 
public static final short | 
madMultipleBondSmallMaximum | 
500 | 
public static final short | 
MAR_DELETED | 
-32768 | 
public static final int | 
MAXIMUM_AUTO_BOND_COUNT | 
20 | 
public static final int | 
MEASURE_DEFAULT_FONTSIZE | 
15 | 
public static final int | 
MOUSE_DELETE | 
4 | 
public static final int | 
MOUSE_MEASURE | 
5 | 
public static final int | 
MOUSE_PICK | 
3 | 
public static final int | 
MOUSE_POPUP_MENU | 
8 | 
public static final int | 
MOUSE_ROTATE | 
0 | 
public static final int | 
MOUSE_ROTATE_Z | 
6 | 
public static final int | 
MOUSE_SLAB_PLANE | 
7 | 
public static final int | 
MOUSE_XLATE | 
2 | 
public static final int | 
MOUSE_ZOOM | 
1 | 
public static final byte | 
MULTIBOND_ALWAYS | 
3 | 
public static final byte | 
MULTIBOND_NEVER | 
0 | 
public static final byte | 
MULTIBOND_SMALL | 
2 | 
public static final byte | 
MULTIBOND_WIREFRAME | 
1 | 
public static final boolean | 
officialRelease | 
false | 
public static final int | 
PARTIAL_CHARGE_RANGE_SIZE | 
31 | 
public static final int | 
PICKING_ANGLE | 
4 | 
public static final int | 
PICKING_BOND | 
9 | 
public static final int | 
PICKING_CENTER | 
7 | 
public static final int | 
PICKING_COORD | 
8 | 
public static final int | 
PICKING_DISTANCE | 
2 | 
public static final int | 
PICKING_IDENT | 
1 | 
public static final int | 
PICKING_LABEL | 
6 | 
public static final int | 
PICKING_MONITOR | 
3 | 
public static final int | 
PICKING_OFF | 
0 | 
public static final int | 
PICKING_SELECT_ATOM | 
10 | 
public static final int | 
PICKING_SELECT_CHAIN | 
12 | 
public static final int | 
PICKING_SELECT_GROUP | 
11 | 
public static final int | 
PICKING_TORSION | 
5 | 
public static final byte | 
PROTEIN_STRUCTURE_DNA | 
4 | 
public static final byte | 
PROTEIN_STRUCTURE_HELIX | 
3 | 
public static final byte | 
PROTEIN_STRUCTURE_NONE | 
0 | 
public static final byte | 
PROTEIN_STRUCTURE_RNA | 
5 | 
public static final byte | 
PROTEIN_STRUCTURE_SHEET | 
2 | 
public static final byte | 
PROTEIN_STRUCTURE_TURN | 
1 | 
public static final int | 
SHAPE_AXES | 
16 | 
public static final int | 
SHAPE_BACKBONE | 
8 | 
public static final int | 
SHAPE_BALLS | 
0 | 
public static final int | 
SHAPE_BBCAGE | 
17 | 
public static final int | 
SHAPE_CARTOON | 
10 | 
public static final int | 
SHAPE_DOTS | 
7 | 
public static final int | 
SHAPE_ECHO | 
20 | 
public static final int | 
SHAPE_FRANK | 
19 | 
public static final int | 
SHAPE_HOVER | 
21 | 
public static final int | 
SHAPE_HSTICKS | 
2 | 
public static final int | 
SHAPE_ISOSURFACE | 
25 | 
public static final int | 
SHAPE_LABELS | 
4 | 
public static final int | 
SHAPE_MAX | 
27 | 
public static final int | 
SHAPE_MEASURES | 
6 | 
public static final int | 
SHAPE_MESHRIBBON | 
12 | 
public static final int | 
SHAPE_MIN_SELECTION_INDEPENDENT | 
16 | 
public static final int | 
SHAPE_PMESH | 
22 | 
public static final int | 
SHAPE_POLYHEDRA | 
23 | 
public static final int | 
SHAPE_PRUEBA | 
26 | 
public static final int | 
SHAPE_RIBBONS | 
13 | 
public static final int | 
SHAPE_ROCKETS | 
14 | 
public static final int | 
SHAPE_SASURFACE | 
24 | 
public static final int | 
SHAPE_SSSTICKS | 
3 | 
public static final int | 
SHAPE_STARS | 
15 | 
public static final int | 
SHAPE_STICKS | 
1 | 
public static final int | 
SHAPE_STRANDS | 
11 | 
public static final int | 
SHAPE_TRACE | 
9 | 
public static final int | 
SHAPE_UCCAGE | 
18 | 
public static final int | 
SHAPE_VECTORS | 
5 | 
public static final int | 
STEREO_DOUBLE | 
1 | 
public static final int | 
STEREO_NONE | 
0 | 
public static final int | 
STEREO_REDBLUE | 
3 | 
public static final int | 
STEREO_REDCYAN | 
2 | 
public static final int | 
STEREO_REDGREEN | 
4 | 
public static final java.lang.String | 
version | 
"10.00.47" | 
| org.openscience.* | 
|---|
| org.openscience.jmol.app.DisplayPanel | ||
|---|---|---|
public static final int | 
X_AXIS | 
1 | 
public static final int | 
Y_AXIS | 
2 | 
public static final int | 
Z_AXIS | 
3 | 
| org.openscience.jmol.app.FileDropper | ||
|---|---|---|
public static final java.lang.String | 
FD_PROPERTY_FILENAME | 
"filename" | 
public static final java.lang.String | 
FD_PROPERTY_INLINE | 
"inline" | 
| org.openscience.jmol.app.Jmol | ||
|---|---|---|
public static final java.lang.String | 
chemFileProperty | 
"chemFile" | 
| org.openscience.jmol.app.PngEncoder | ||
|---|---|---|
public static final boolean | 
ENCODE_ALPHA | 
true | 
public static final int | 
FILTER_LAST | 
2 | 
public static final int | 
FILTER_NONE | 
0 | 
public static final int | 
FILTER_SUB | 
1 | 
public static final int | 
FILTER_UP | 
2 | 
public static final boolean | 
NO_ALPHA | 
false | 
  | 
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