org.jmol.api
Class JmolAdapter.AtomIterator

java.lang.Object
  org.jmol.api.JmolAdapter.AtomIterator

Enclosing class:

JmolAdapter

public abstract class JmolAdapter.AtomIterator
extends java.lang.Object

AtomIterator is used to enumerate all the clientAtom objects in a specified frame. Note that Java 1.1 does not have java.util.Iterator so we will define our own AtomIterator

Constructor Summary

JmolAdapter.AtomIterator()

Method Summary

char	getAlternateLocationID()
java.lang.String	getAtomName()
int	getAtomSerial()
int	getAtomSetIndex()
float	getBfactor()
char	getChainID()
java.lang.Object	getClientAtomReference()
int	getElementNumber()
java.lang.String	getElementSymbol()
int	getFormalCharge()
java.lang.String	getGroup3()
char	getInsertionCode()
boolean	getIsHetero()
int	getOccupancy()
float	getPartialCharge()
int	getSequenceNumber()
abstract java.lang.Object	getUniqueID()
float	getVectorX()
float	getVectorY()
float	getVectorZ()
abstract float	getX()
abstract float	getY()
abstract float	getZ()
abstract boolean	hasNext()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

JmolAdapter.AtomIterator

public JmolAdapter.AtomIterator()

Method Detail

hasNext

public abstract boolean hasNext()

getAtomSetIndex

public int getAtomSetIndex()

getUniqueID

public abstract java.lang.Object getUniqueID()

getElementNumber

public int getElementNumber()

getElementSymbol

public java.lang.String getElementSymbol()

getAtomName

public java.lang.String getAtomName()

getFormalCharge

public int getFormalCharge()

getPartialCharge

public float getPartialCharge()

getX

public abstract float getX()

getY

public abstract float getY()

getZ

public abstract float getZ()

getVectorX

public float getVectorX()

getVectorY

public float getVectorY()

getVectorZ

public float getVectorZ()

getBfactor

public float getBfactor()

getOccupancy

public int getOccupancy()

getIsHetero

public boolean getIsHetero()

getAtomSerial

public int getAtomSerial()

getChainID

public char getChainID()

getAlternateLocationID

public char getAlternateLocationID()

getGroup3

public java.lang.String getGroup3()

getSequenceNumber

public int getSequenceNumber()

getInsertionCode

public char getInsertionCode()

getClientAtomReference

public java.lang.Object getClientAtomReference()