pdbParser
Class PDBreader

java.lang.Object
  pdbParser.PDBreader

All Implemented Interfaces:

IPDBreader

public class PDBreader
extends java.lang.Object
implements IPDBreader

This class makes functions available to construct a Protein object by given PDBfile.

Constructor Summary

PDBreader()
initialises the constructor

Method Summary

java.util.Hashtable	getAllProteins(java.lang.String DBpath) This function creates for each PDBfile in the given directory a Protein object.
Protein	getProtein(java.lang.String PDBcode, java.lang.String DBpath) This function creates a Protein object by given PDBname and directory.
java.util.Hashtable	getProteins(java.util.Vector vector, java.lang.String DBpath) This function creates for each PDBfile in the given directory a Protein object.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PDBreader

public PDBreader()

initialises the constructor

Method Detail

getProteins

public java.util.Hashtable getProteins(java.util.Vector vector,
                                       java.lang.String DBpath)
                                throws java.io.IOException

This function creates for each PDBfile in the given directory a Protein object. The Protein objects will be stored in a hashtable. The keys are the PDBnames and the values are the corresponding Protein objects.

Specified by:

getProteins in interface IPDBreader

Parameters:

PDBnames - Vector

Directory - String

Returns:

Proteins Hashtable

Throws:

java.io.IOException

getProtein

public Protein getProtein(java.lang.String PDBcode,
                          java.lang.String DBpath)
                   throws java.io.IOException

This function creates a Protein object by given PDBname and directory.

Specified by:

getProtein in interface IPDBreader

Parameters:

String - PDBname

String - Path

Returns:

Protein Protein

Throws:

java.io.IOException

getAllProteins

public java.util.Hashtable getAllProteins(java.lang.String DBpath)
                                   throws java.io.IOException

This function creates for each PDBfile in the given directory a Protein object. The Protein objects will be stored in a hashtable. The keys are the PDBnames and the values are the correspnding Protein objects.

Specified by:

getAllProteins in interface IPDBreader

Parameters:

DBpath - String

Returns:

ProteinObjects Hashtable

Throws:

java.io.IOException