gui
Class JmolPdbPreview

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  gui.JmolPdbPreview

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, javax.accessibility.Accessible, JmolStatusListener

public class JmolPdbPreview
extends javax.swing.JPanel
implements JmolStatusListener

This class creates a new JPanel with a new JmolViewer located on it.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Field Summary

Fields inherited from class javax.swing.JComponent

TOOL_TIP_TEXT_KEY, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

JmolPdbPreview()
Creates a new JPanel with a new JmolViewer located on it.

JmolPdbPreview(javax.swing.JPanel frame)
Creates a new JmolViewer located on the given JPanel.

JmolPdbPreview(javax.swing.JPanel frame, Protein lipid, boolean restricted)
Creates a new JmolViewer located on the given JPanel.

JmolPdbPreview(javax.swing.JPanel frame, Protein lipid, boolean restricted, JPreview preview)
Creates a new JmolViewer located on the given JPanel.

Method Summary

javax.swing.JPanel	getFrame() Returns the used frame
JmolViewer	getViewer() returns the JmolViewer
void	handlePopupMenu(int x, int y) Sets the PopupMenu of jmol on the given x and y position
void	notifyAtomPicked(int atomIndex, java.lang.String strInfo)
void	notifyFileLoaded(java.lang.String fullPathName, java.lang.String fileName, java.lang.String modelName, java.lang.Object clientFile, java.lang.String errorMessage)
void	notifyFileNotLoaded(java.lang.String fullPathName, java.lang.String errorMsg)
void	notifyFrameChanged(int frameNo)
void	notifyMeasurementsChanged()
void	notifyScriptTermination(java.lang.String statusMessage, int msWalltime)
void	paint(java.awt.Graphics g) paint Jmol
void	reset() Reset the Jmol display.
void	scriptEcho(java.lang.String strEcho)
void	scriptStatus(java.lang.String strStatus)
void	setFrame(javax.swing.JPanel frame)
void	setStatusMessage(java.lang.String statusMessage)
void	setStructure() !
void	showConsole(boolean showConsole)
void	showUrl(java.lang.String url)

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintImmediately, paintImmediately, print, printAll, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, contains, createImage, createImage, createVolatileImage, createVolatileImage, dispatchEvent, enable, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

JmolPdbPreview

public JmolPdbPreview()

Creates a new JPanel with a new JmolViewer located on it.

JmolPdbPreview

public JmolPdbPreview(javax.swing.JPanel frame)

Creates a new JmolViewer located on the given JPanel.

Parameters:

frame - JPanel on which the the new viewer has been added.

JmolPdbPreview

public JmolPdbPreview(javax.swing.JPanel frame,
                      Protein lipid,
                      boolean restricted)

Creates a new JmolViewer located on the given JPanel. Too use all functions of the viewer set restricted mode to false. If restricted is set to true, then the viewer uses not all JmolFeatures! It needs a lipid also (in pdb format), to generate a pdb membrane later.

Parameters:

frame - The JPanel the viewer is located on.

lipid - The used lipid

restricted - Use restricted mode.

JmolPdbPreview

public JmolPdbPreview(javax.swing.JPanel frame,
                      Protein lipid,
                      boolean restricted,
                      JPreview preview)

Creates a new JmolViewer located on the given JPanel. Too use all functions of the viewer set restricted mode to false. If restricted is set to true, then the viewer uses not all JmolFeatures! It needs a lipid also (in pdb format), to generate a pdb membrane later.

Parameters:

frame - The JPanel the viewer is located on.

lipid - The used lipid.

restricted - Use restricted mode.

preview - A JPreview Ojbect to locate it inside the viewer himself to communicate with the JPreview class.

Method Detail

getFrame

public javax.swing.JPanel getFrame()

Returns the used frame

Returns:

JPanel

setFrame

public void setFrame(javax.swing.JPanel frame)

Parameters:

frame - The frame to set.

setStructure

public void setStructure()

! Not longer used, will be deleted in next release !

getViewer

public JmolViewer getViewer()

returns the JmolViewer

Returns:

the viewer

paint

public void paint(java.awt.Graphics g)

paint Jmol

Overrides:

paint in class javax.swing.JComponent

Parameters:

g - Graphics g

reset

public void reset()

Reset the Jmol display.

notifyFileNotLoaded

public void notifyFileNotLoaded(java.lang.String fullPathName,
                                java.lang.String errorMsg)

handlePopupMenu

public void handlePopupMenu(int x,
                            int y)

Sets the PopupMenu of jmol on the given x and y position

Specified by:

handlePopupMenu in interface JmolStatusListener

Parameters:

x - X position.

y - Y porition.

notifyFileLoaded

public void notifyFileLoaded(java.lang.String fullPathName,
                             java.lang.String fileName,
                             java.lang.String modelName,
                             java.lang.Object clientFile,
                             java.lang.String errorMessage)

Specified by:

notifyFileLoaded in interface JmolStatusListener

setStatusMessage

public void setStatusMessage(java.lang.String statusMessage)

Specified by:

setStatusMessage in interface JmolStatusListener

scriptEcho

public void scriptEcho(java.lang.String strEcho)

Specified by:

scriptEcho in interface JmolStatusListener

scriptStatus

public void scriptStatus(java.lang.String strStatus)

Specified by:

scriptStatus in interface JmolStatusListener

notifyScriptTermination

public void notifyScriptTermination(java.lang.String statusMessage,
                                    int msWalltime)

Specified by:

notifyScriptTermination in interface JmolStatusListener

notifyMeasurementsChanged

public void notifyMeasurementsChanged()

Specified by:

notifyMeasurementsChanged in interface JmolStatusListener

notifyFrameChanged

public void notifyFrameChanged(int frameNo)

Specified by:

notifyFrameChanged in interface JmolStatusListener

notifyAtomPicked

public void notifyAtomPicked(int atomIndex,
                             java.lang.String strInfo)

Specified by:

notifyAtomPicked in interface JmolStatusListener

showUrl

public void showUrl(java.lang.String url)

Specified by:

showUrl in interface JmolStatusListener

showConsole

public void showConsole(boolean showConsole)

Specified by:

showConsole in interface JmolStatusListener