Serialized Form

Package <Unnamed>

Class Start extends Main implements Serializable

Package com.obrador

Class com.obrador.JpegEncoder extends java.awt.Frame implements Serializable

Serialized Fields

runner

java.lang.Thread runner

outStream

java.io.BufferedOutputStream outStream

image

java.awt.Image image

JpegObj

com.obrador.JpegInfo JpegObj

Huf

com.obrador.Huffman Huf

dct

com.obrador.DCT dct

imageHeight

int imageHeight

imageWidth

int imageWidth

Quality

int Quality

code

int code

Package gui

Class gui.ChangePercent extends javax.swing.JDialog implements Serializable

Serialized Fields

okeyButton

javax.swing.JButton okeyButton

cancelButton

javax.swing.JButton cancelButton

ratio

javax.swing.JSpinner ratio

changen

boolean changen

Class gui.CreateKomponent extends javax.swing.JDialog implements Serializable

Serialized Fields

okey

javax.swing.JButton okey

cancel

javax.swing.JButton cancel

kategoryName

javax.swing.JTextField kategoryName

proteinName

javax.swing.JTextField proteinName

proteinRatio

javax.swing.JSpinner proteinRatio

moven

boolean moven

type

int type

Class gui.Credits extends javax.swing.JDialog implements Serializable

Serialized Fields

description

javax.swing.JTextField description

name

javax.swing.JTextField name

returnValue

boolean returnValue

Class gui.DefaultMutableTreeNodeFile extends javax.swing.tree.DefaultMutableTreeNode implements Serializable

Serialized Fields

file

java.lang.String file

pdbname

java.lang.String pdbname

protein

Protein protein

Class gui.DefaultMutableTreeNodeKatagory extends javax.swing.tree.DefaultMutableTreeNode implements Serializable

Serialized Fields

is_value

int is_value

name

java.lang.String name

ideal_value

int ideal_value

Class gui.DefaultMutableTreeNodeProtein extends javax.swing.tree.DefaultMutableTreeNode implements Serializable

Serialized Fields

percent

int percent

file

java.lang.String file

pdbName

java.lang.String pdbName

nodeName

java.lang.String nodeName

protein

Protein protein

min_percent

int min_percent

Class gui.HelpPanel extends javax.swing.JDialog implements Serializable

Serialized Fields

editorPaneSection

javax.swing.JEditorPane editorPaneSection

txar

javax.swing.JTextArea txar

cancel

javax.swing.JButton cancel

scrollPane

javax.swing.JScrollPane scrollPane

topbox

javax.swing.Box topbox

bottombox

javax.swing.Box bottombox

mainbox

javax.swing.Box mainbox

tree

javax.swing.JTree tree

Class gui.HelpTest extends javax.swing.JFrame implements Serializable

Class gui.Introduction extends javax.swing.JDialog implements Serializable

Serialized Fields

description

javax.swing.JTextField description

name

javax.swing.JTextField name

returnValue

boolean returnValue

Class gui.JImport extends javax.swing.JPanel implements Serializable

Serialized Fields

tree

javax.swing.JTree tree

original

javax.swing.JTree original

searchText

java.awt.TextField searchText

model

javax.swing.tree.DefaultTreeModel model

modelOri

javax.swing.tree.DefaultTreeModel modelOri

root

javax.swing.tree.DefaultMutableTreeNode root

rootOri

javax.swing.tree.DefaultMutableTreeNode rootOri

popUpPDB

javax.swing.JPopupMenu popUpPDB

popUpRoot

javax.swing.JPopupMenu popUpRoot

pdbDelete

javax.swing.JMenuItem pdbDelete

pdbAdd

javax.swing.JMenuItem pdbAdd

renameDB

javax.swing.JMenuItem renameDB

npd

NewProteinDialog npd

Class gui.JmolPdbPreview extends javax.swing.JPanel implements Serializable

Serialized Fields

currentSize

java.awt.Dimension currentSize

rectClip

java.awt.Rectangle rectClip

frame

javax.swing.JPanel frame

viewer

JmolViewer viewer

adapter

JmolAdapter adapter

jmolpopup

JmolPopup jmolpopup

Class gui.JPreview extends javax.swing.JPanel implements Serializable

Serialized Fields

pdbFiles

java.util.Vector pdbFiles

protein

Protein protein

lipid

Protein lipid

workPanel

JWorkPanel workPanel

membraneJPanel

javax.swing.JPanel membraneJPanel

jPanelJmol

javax.swing.JPanel jPanelJmol

jPanelJmolButtons

javax.swing.JPanel jPanelJmolButtons

jmolPdbViewer

JmolPdbPreview jmolPdbViewer

jmolMemViewer

JmolPdbPreview jmolMemViewer

Class gui.JProperties extends javax.swing.JPanel implements Serializable

Serialized Fields

sp

javax.swing.JScrollPane sp

information

javax.swing.JTextArea information

Class gui.JWorkPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

importPDB

JImport importPDB

membranePreview

JPreview membranePreview

membraneViewer

JPreview membraneViewer

statistics

Statistic statistics

properties

JProperties properties

msg_panel

Msg_panel msg_panel

tp

javax.swing.JTabbedPane tp

membran

Membran membran

preview

boolean preview

property

boolean property

statistic

boolean statistic

membrane

boolean membrane

msg

boolean msg

main

Main main

Class gui.Main extends javax.swing.JFrame implements Serializable

Serialized Fields

workPanel

JWorkPanel workPanel

loadDB

javax.swing.JMenuItem loadDB

saveDB

javax.swing.JMenuItem saveDB

newDB

javax.swing.JMenuItem newDB

newMembran

javax.swing.JMenuItem newMembran

saveMembran

javax.swing.JMenuItem saveMembran

loadMembran

javax.swing.JMenuItem loadMembran

generateMembran

javax.swing.JMenuItem generateMembran

exit

javax.swing.JMenuItem exit

starting

Starting starting

goon1

boolean goon1

goon2

boolean goon2

Class gui.MainStart extends Main implements Serializable

Class gui.MainTest extends Main implements Serializable

Class gui.Membran extends javax.swing.JPanel implements Serializable

Serialized Fields

tree

javax.swing.JTree tree

pdbFiles

javax.swing.JTree pdbFiles

popupPDB

javax.swing.JPopupMenu popupPDB

popupKomponente

javax.swing.JPopupMenu popupKomponente

popupMembran

javax.swing.JPopupMenu popupMembran

model

javax.swing.tree.DefaultTreeModel model

pdbDelete

javax.swing.JMenuItem pdbDelete

pdbRename

javax.swing.JMenuItem pdbRename

pdbPreview

javax.swing.JMenuItem pdbPreview

pdbShowProperties

javax.swing.JMenuItem pdbShowProperties

pdbChangePercent

javax.swing.JMenuItem pdbChangePercent

membranRename

javax.swing.JMenuItem membranRename

membranPreview

javax.swing.JMenuItem membranPreview

membranShowProperties

javax.swing.JMenuItem membranShowProperties

membranChangePercent

javax.swing.JMenuItem membranChangePercent

kompDelete

javax.swing.JMenuItem kompDelete

kompRename

javax.swing.JMenuItem kompRename

kompShowProperties

javax.swing.JMenuItem kompShowProperties

root

DefaultMutableTreeNodeKatagory root

previewButton

javax.swing.JButton previewButton

componenteNumb

int componenteNumb

main

Main main

nmd

NewMembraneDialog nmd

tdtl

TreeDropTargetListener tdtl

Class gui.Msg_panel extends javax.swing.JPanel implements Serializable

Serialized Fields

scroll

javax.swing.JScrollPane scroll

panel

javax.swing.JPanel panel

mHeight

int mHeight

mWidth

int mWidth

wWidth

int wWidth

wHeight

int wHeight

pWidth

int pWidth

pHeight

int pHeight

mOffsetX

int mOffsetX

mOffsetY

int mOffsetY

proteinElementNumber

int proteinElementNumber

proteinMatrix

ProteinMatrix proteinMatrix

clickedProtein

ProteinElement clickedProtein

clickedProteinSet

boolean clickedProteinSet

vectorE

java.util.Vector vectorE

proteins

java.util.Vector proteins

generateNew

javax.swing.JButton generateNew

rotateProtein

javax.swing.JButton rotateProtein

blub

javax.swing.JButton blub

zoomIn

javax.swing.JButton zoomIn

zoomOut

javax.swing.JButton zoomOut

donen

javax.swing.JButton donen

generateNewText

java.lang.String generateNewText

rotateProteinText

java.lang.String rotateProteinText

blubText

java.lang.String blubText

zoomInText

java.lang.String zoomInText

zoomOutText

java.lang.String zoomOutText

donenText

java.lang.String donenText

Class gui.NewMembraneDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

description

javax.swing.JTextField description

name

javax.swing.JTextField name

species

javax.swing.JTextField species

celltype

javax.swing.JTextField celltype

returnValue

boolean returnValue

ratioNumber

javax.swing.JSpinner ratioNumber

Class gui.NewProteinDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

description

javax.swing.JTextField description

name

javax.swing.JTextField name

returnValue

boolean returnValue

Class gui.PreviewLipidDrawer extends javax.swing.JPanel implements Serializable

Serialized Fields

image

java.awt.Image image

scaledInstance

java.awt.Image scaledInstance

iconLipid

javax.swing.ImageIcon iconLipid

labelList

java.util.Vector labelList

quantity

int quantity

Class gui.SaveQuestion extends javax.swing.JDialog implements Serializable

Serialized Fields

okeyButton

javax.swing.JButton okeyButton

cancelButton

javax.swing.JButton cancelButton

noButton

javax.swing.JButton noButton

returnValue

int returnValue

Class gui.Starting extends javax.swing.JDialog implements Serializable

Serialized Fields

load

javax.swing.JButton load

exit

javax.swing.JButton exit

newModel

javax.swing.JButton newModel

sec

boolean sec

loadText

java.lang.String loadText

loadAction

java.lang.String loadAction

newModelAction

java.lang.String newModelAction

content

java.lang.String content

area

javax.swing.JTextArea area

description

javax.swing.JTextArea description

pro

javax.swing.JLabel pro

mem

javax.swing.JLabel mem

lip

javax.swing.JLabel lip

firstStep

javax.swing.JLabel firstStep

secStep

javax.swing.JLabel secStep

thirdStep

javax.swing.JLabel thirdStep

main

Main main

step

int step

one

java.awt.Color one

two

java.awt.Color two

introduction

boolean introduction

Class gui.Statistic extends javax.swing.JPanel implements Serializable

Serialized Fields

legend

javax.swing.JTextArea legend

membranTree

javax.swing.JTree membranTree

width

int width

height

int height

first_graph

java.util.Vector first_graph

restKategorie

int restKategorie

lipide

int lipide

show

java.lang.String show

sp

javax.swing.JScrollPane sp

Package gui.dragndrop

Class gui.dragndrop.TransferableTreeNode extends javax.swing.tree.DefaultMutableTreeNode implements Serializable

Serialized Fields

data

javax.swing.tree.DefaultMutableTreeNode data

Package gui.messages

Class gui.messages.ErrorMessage extends javax.swing.JOptionPane implements Serializable

Package jmolOutsideApplicationTest

Class jmolOutsideApplicationTest.OuterIntegration extends javax.swing.JPanel implements Serializable

Serialized Fields

currentSize

java.awt.Dimension currentSize

rectClip

java.awt.Rectangle rectClip

viewer

JmolViewer viewer

adapter

JmolAdapter adapter

jmolpopup

JmolPopup jmolpopup

Package msg

Class msg.MatrixProgressBar extends javax.swing.JPanel implements Serializable

Serialized Fields

bar

javax.swing.JProgressBar bar

width

int width

height

int height

progBarHeight

int progBarHeight

labelHeight

int labelHeight

Class msg.ProteinElement extends javax.swing.JPanel implements Serializable

Serialized Fields

id

java.lang.String id

component

java.lang.String component

subcomponent

java.lang.String subcomponent

key

java.lang.String key

pdbcode

java.lang.String pdbcode

rotateProteinText

java.lang.String rotateProteinText

pressed

boolean pressed

oldMouseX

int oldMouseX

oldMouseY

int oldMouseY

startMouseX

int startMouseX

startMouseY

int startMouseY

pX

int pX

pY

int pY

pXnew

int pXnew

pYnew

int pYnew

sizeX

int sizeX

sizeY

int sizeY

ratio

int ratio

xa

int xa

ya

int ya

vWidth

int vWidth

vHeight

int vHeight

mOffsetX

int mOffsetX

mOffsetY

int mOffsetY

borderSize

int borderSize

borderSizeHl

int borderSizeHl

rotationAngle

int rotationAngle

colorBackground

java.awt.Color colorBackground

colorBorder

java.awt.Color colorBorder

colorText

java.awt.Color colorText

colorBackgroundHl

java.awt.Color colorBackgroundHl

colorBorderHl

java.awt.Color colorBorderHl

colorBackgroundPressed

java.awt.Color colorBackgroundPressed

colorTextPressed

java.awt.Color colorTextPressed

proteinLabel

javax.swing.JLabel proteinLabel

popupRotate

javax.swing.JPopupMenu popupRotate

alles

Msg_panel alles

proteinMatrix

ProteinMatrix proteinMatrix

lipids

java.util.Vector lipids

Class msg.ProteinMatrix extends javax.swing.JPanel implements Serializable

Serialized Fields

alles

Msg_panel alles

mHeight

int mHeight

mWidth

int mWidth

wHeight

int wHeight

wWidth

int wWidth

ratioWidth

int ratioWidth

ratioHeight

int ratioHeight

resizeValue

int resizeValue

maxTry

int maxTry

mZoom

int mZoom

mZoomFactor

int mZoomFactor

debugModus

boolean debugModus

colorBackground

java.awt.Color colorBackground

elementList

java.util.Vector elementList

membranModel

MembranModel membranModel

busy

java.util.Hashtable busy

progbar

MatrixProgressBar progbar

Package org.jmol.applet

Class org.jmol.applet.JmolAppletControl extends java.applet.Applet implements Serializable

Serialized Fields

myName

java.lang.String myName

mayScript

boolean mayScript

appletRegistry

JmolAppletRegistry appletRegistry

context

java.applet.AppletContext context

targetName

java.lang.String targetName

typeName

java.lang.String typeName

type

int type

width

int width

height

int height

colorBackground

java.awt.Color colorBackground

colorForeground

java.awt.Color colorForeground

script

java.lang.String script

label

java.lang.String label

altScript

java.lang.String altScript

buttonCallback

java.lang.String buttonCallback

groupName

java.lang.String groupName

toggleState

boolean toggleState

awtButton

java.awt.Button awtButton

awtCheckbox

java.awt.Checkbox awtCheckbox

myControl

java.awt.Component myControl

Package org.jmol.appletwrapper

Class org.jmol.appletwrapper.AppletWrapper extends java.applet.Applet implements Serializable

Serialized Fields

wrappedAppletClassName

java.lang.String wrappedAppletClassName

preloadImageName

java.lang.String preloadImageName

preloadTextMessage

java.lang.String preloadTextMessage

preloadThreadCount

int preloadThreadCount

preloadClassNames

java.lang.String[] preloadClassNames

preloadClassIndex

int preloadClassIndex

previousClassName

java.lang.String previousClassName

needToCompleteInitialization

boolean needToCompleteInitialization

preloadImageReadyForDisplay

boolean preloadImageReadyForDisplay

preloadImagePainted

boolean preloadImagePainted

preloadImage

java.awt.Image preloadImage

mediaTracker

java.awt.MediaTracker mediaTracker

bgcolor

java.awt.Color bgcolor

textColor

java.awt.Color textColor

wrappedApplet

WrappedApplet wrappedApplet

startTime

long startTime

clockX

int clockX

clockBaseline

int clockBaseline

clockWidth

int clockWidth

fontSize

int fontSize

font

java.awt.Font font

fontMetrics

java.awt.FontMetrics fontMetrics

fontAscent

int fontAscent

fontHeight

int fontHeight

Package org.jmol.jcamp

Class org.jmol.jcamp.SaisieDlg extends java.awt.Dialog implements Serializable

Serialized Fields

Ok

java.awt.Button Ok

Annuler

java.awt.Button Annuler

Saisie

java.awt.TextField Saisie

OkStatus

boolean OkStatus

fin

boolean fin

Class org.jmol.jcamp.Visua extends java.applet.Applet implements Serializable

Serialized Fields

My_ZoneVisu

ZoneVisu My_ZoneVisu

My_Thread

java.lang.Thread My_Thread

_graphDataUtils

GraphCharacteristics _graphDataUtils

texte

java.util.Vector texte

nbLignes

int nbLignes

shitty_starting_constant

int shitty_starting_constant

Firstx

double Firstx

Lastx

double Lastx

YFactor

double YFactor

Nbpoints

int Nbpoints

nmr_observe_frequency

double nmr_observe_frequency

TexteTitre

java.lang.String TexteTitre

x_units

java.lang.String x_units

y_units

java.lang.String y_units

Datatype

java.lang.String Datatype

Load_File

java.awt.Button Load_File

Zoom_In

java.awt.Button Zoom_In

Zoom_Back

java.awt.Button Zoom_Back

Zoom_Out

java.awt.Button Zoom_Out

Reverse

java.awt.Checkbox Reverse

Grid

java.awt.Checkbox Grid

Integrate

java.awt.Checkbox Integrate

Find_Peak

java.awt.Button Find_Peak

JCamp

java.awt.Button JCamp

Fenetre_Load_File

java.awt.Frame Fenetre_Load_File

Dialogue_Load_File

SaisieDlg Dialogue_Load_File

contexte

java.applet.AppletContext contexte

clickable_peaks_frame_name

java.lang.String clickable_peaks_frame_name

Flag_Zoomin

boolean Flag_Zoomin

Flag_Zoomback

boolean Flag_Zoomback

Flag_Zoomout

boolean Flag_Zoomout

Flag_Reverse

boolean Flag_Reverse

Flag_Integrate

boolean Flag_Integrate

Flag_Dialogue_File_Enabled

boolean Flag_Dialogue_File_Enabled

Flag_Redraw

boolean Flag_Redraw

Flag_Find_Peak

boolean Flag_Find_Peak

Flag_Write_JCamp

boolean Flag_Write_JCamp

isActive

boolean isActive

hasPrivilege

boolean hasPrivilege

inNavigator

boolean inNavigator

inExplorer

boolean inExplorer

openDialog

java.awt.FileDialog openDialog

saveDialog

java.awt.FileDialog saveDialog

Current_Error

java.lang.String Current_Error

Class org.jmol.jcamp.ZoneVisu extends java.awt.Canvas implements Serializable

Serialized Fields

_graphDataUtils

GraphCharacteristics _graphDataUtils

Firstx

double Firstx

Lastx

double Lastx

Miny

double Miny

Maxy

double Maxy

YFactor

double YFactor

xLowerLimit

int xLowerLimit

xUpperLimit

int xUpperLimit

nbLignes

int nbLignes

Nbpoints

int Nbpoints

TexteTitre

java.lang.String TexteTitre

x_units

java.lang.String x_units

y_units

java.lang.String y_units

typedata

int typedata

reverse

boolean reverse

RealFirstx

double RealFirstx

RealLastx

double RealLastx

Last_RealFirstx

double Last_RealFirstx

Last_RealLastx

double Last_RealLastx

Last_Firstx

double Last_Firstx

Last_Lastx

double Last_Lastx

Sav_Firstx

double Sav_Firstx

Sav_Lastx

double Sav_Lastx

Flag_Clickable_Peaks

boolean Flag_Clickable_Peaks

Nb_Clickable_Peaks

int Nb_Clickable_Peaks

Peak_Start

double[] Peak_Start

Peak_Stop

double[] Peak_Stop

Peak_Html

java.lang.String[] Peak_Html

Flag_Load_Now_Html

boolean Flag_Load_Now_Html

Name_Load_Now_Html

java.lang.String Name_Load_Now_Html

Sav_Nbpoints_a_tracer

int Sav_Nbpoints_a_tracer

Nbpoints_a_tracer

int Nbpoints_a_tracer

prempoint

int prempoint

Y_Values

java.lang.String Y_Values

ShowTitle

java.lang.String ShowTitle

shitty_starting_constant

int shitty_starting_constant

tableau_points

double[] tableau_points

tableau_integrate

double[] tableau_integrate

Incrx

double Incrx

Multx

double Multx

Multy

double Multy

Maxintegrate

double Maxintegrate

x

double x

y

double y

ax

double ax

ay

double ay

xd

double xd

xf

double xf

largeur

int largeur

hauteur

int hauteur

largeur_gfx

int largeur_gfx

hauteur_gfx

int hauteur_gfx

decalx_gfx

int decalx_gfx

decaly_gfx

int decaly_gfx

hauteur_bandeau

int hauteur_bandeau

Flag_Grid

boolean Flag_Grid

Flag_Reverse

boolean Flag_Reverse

Flag_Integrate

boolean Flag_Integrate

location_textetitre

int location_textetitre

BufImg

java.awt.Image BufImg

BufGra

java.awt.Graphics BufGra

SavBufImg

java.awt.Image SavBufImg

SavBufGra

java.awt.Graphics SavBufGra

ZoomBufImg

java.awt.Image ZoomBufImg

ZoomBufGra

java.awt.Graphics ZoomBufGra

x1_zoom

int x1_zoom

x2_zoom

int x2_zoom

indice

int indice

Un_Nombre

java.lang.String Un_Nombre

Package org.jmol.smiles

Class org.jmol.smiles.InvalidSmilesException extends java.lang.Exception implements Serializable

Package org.openscience.jmol.app

Class org.openscience.jmol.app.AboutDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

html

javax.swing.JEditorPane html

Class org.openscience.jmol.app.AtomSetChooser extends javax.swing.JFrame implements Serializable

Serialized Fields

animThread

java.lang.Thread animThread

propertiesTextArea

javax.swing.JTextArea propertiesTextArea

tree

javax.swing.JTree tree

treeModel

javax.swing.tree.DefaultTreeModel treeModel

viewer

JmolViewer viewer

repeatCheckBox

javax.swing.JCheckBox repeatCheckBox

selectSlider

javax.swing.JSlider selectSlider

infoLabel

javax.swing.JLabel infoLabel

fpsSlider

javax.swing.JSlider fpsSlider

amplitudeSlider

javax.swing.JSlider amplitudeSlider

periodSlider

javax.swing.JSlider periodSlider

scaleSlider

javax.swing.JSlider scaleSlider

radiusSlider

javax.swing.JSlider radiusSlider

saveChooser

javax.swing.JFileChooser saveChooser

indexes

int[] indexes

Sequence of atom set indexes in current tree selection for a branch, or siblings for a leaf.

currentIndex

int currentIndex

Class org.openscience.jmol.app.ConsoleTextArea extends javax.swing.JTextArea implements Serializable

Class org.openscience.jmol.app.DisplayPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

status

org.openscience.jmol.app.StatusBar status

guimap

org.openscience.jmol.app.GuiMap guimap

viewer

JmolViewer viewer

displaySpeed

java.lang.String displaySpeed

showPaintTime

boolean showPaintTime

dimSize

java.awt.Dimension dimSize

rectClip

java.awt.Rectangle rectClip

deleteAction

org.openscience.jmol.app.DisplayPanel.DeleteAction deleteAction

pickAction

org.openscience.jmol.app.DisplayPanel.PickAction pickAction

rotateAction

org.openscience.jmol.app.DisplayPanel.RotateAction rotateAction

zoomAction

org.openscience.jmol.app.DisplayPanel.ZoomAction zoomAction

xlateAction

org.openscience.jmol.app.DisplayPanel.XlateAction xlateAction

homeAction

org.openscience.jmol.app.DisplayPanel.HomeAction homeAction

frontAction

org.openscience.jmol.app.DisplayPanel.FrontAction frontAction

topAction

org.openscience.jmol.app.DisplayPanel.TopAction topAction

bottomAction

org.openscience.jmol.app.DisplayPanel.BottomAction bottomAction

rightAction

org.openscience.jmol.app.DisplayPanel.RightAction rightAction

leftAction

org.openscience.jmol.app.DisplayPanel.LeftAction leftAction

defineCenterAction

org.openscience.jmol.app.DisplayPanel.DefineCenterAction defineCenterAction

acchargeAction

org.openscience.jmol.app.DisplayPanel.aChargeColorAction acchargeAction

actypeAction

org.openscience.jmol.app.DisplayPanel.aAtomTypeColorAction actypeAction

hydrogensAction

org.openscience.jmol.app.DisplayPanel.HydrogensAction hydrogensAction

measurementsAction

org.openscience.jmol.app.DisplayPanel.MeasurementsAction measurementsAction

selectallAction

org.openscience.jmol.app.DisplayPanel.SelectallAction selectallAction

deselectallAction

org.openscience.jmol.app.DisplayPanel.DeselectallAction deselectallAction

wireframerotationAction

org.openscience.jmol.app.DisplayPanel.WireFrameRotationAction wireframerotationAction

perspectiveAction

org.openscience.jmol.app.DisplayPanel.PerspectiveAction perspectiveAction

axesAction

org.openscience.jmol.app.DisplayPanel.AxesAction axesAction

boundboxAction

org.openscience.jmol.app.DisplayPanel.BoundboxAction boundboxAction

menuListener

javax.swing.event.MenuListener menuListener

timeBegin

long timeBegin

lastMotionEventNumber

int lastMotionEventNumber

Class org.openscience.jmol.app.FileChooser extends javax.swing.JFileChooser implements Serializable

Serialized Fields

dialogLocation

java.awt.Point dialogLocation

dialogSize

java.awt.Dimension dialogSize

dialog

javax.swing.JDialog dialog

Class org.openscience.jmol.app.FilePreview extends javax.swing.JPanel implements Serializable

Serialized Fields

active

javax.swing.JCheckBox active

chooser

javax.swing.JFileChooser chooser

display

org.openscience.jmol.app.JmolPanel display

Class org.openscience.jmol.app.FileTyper extends javax.swing.JPanel implements Serializable

Serialized Fields

useFileExtensionCheckBox

javax.swing.JCheckBox useFileExtensionCheckBox

fileTypeLabel

javax.swing.JLabel fileTypeLabel

fileTypeComboBox

javax.swing.JComboBox fileTypeComboBox

useFileExtension

boolean useFileExtension

choices

java.lang.String[] choices

defaultTypeIndex

int defaultTypeIndex

fileType

java.lang.String fileType

Class org.openscience.jmol.app.HelpDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

html

javax.swing.JEditorPane html

Class org.openscience.jmol.app.ImageTyper extends javax.swing.JPanel implements Serializable

Serialized Fields

Choices

java.lang.String[] Choices

def

int def

result

java.lang.String result

qSlider

javax.swing.JSlider qSlider

cb

javax.swing.JComboBox cb

Class org.openscience.jmol.app.Jmol extends javax.swing.JPanel implements Serializable

Serialized Fields

viewer

JmolViewer viewer

The data model.

display

DisplayPanel display

status

org.openscience.jmol.app.StatusBar status

preferencesDialog

PreferencesDialog preferencesDialog

measurementTable

MeasurementTable measurementTable

recentFiles

org.openscience.jmol.app.RecentFilesDialog recentFiles

scriptWindow

ScriptWindow scriptWindow

atomSetChooser

AtomSetChooser atomSetChooser

executeScriptAction

org.openscience.jmol.app.Jmol.ExecuteScriptAction executeScriptAction

frame

javax.swing.JFrame frame

openChooser

FileChooser openChooser

saveChooser

javax.swing.JFileChooser saveChooser

fileTyper

FileTyper fileTyper

exportChooser

javax.swing.JFileChooser exportChooser

jmolpopup

JmolPopup jmolpopup

guimap

org.openscience.jmol.app.GuiMap guimap

startupWidth

int startupWidth

startupHeight

int startupHeight

pcs

java.beans.PropertyChangeSupport pcs

currentFile

java.io.File currentFile

The current file.

splash

Splash splash

commands

java.util.Hashtable commands

menuItems

java.util.Hashtable menuItems

menubar

javax.swing.JMenuBar menubar

toolbar

javax.swing.JToolBar toolbar

exportAction

org.openscience.jmol.app.Jmol.ExportAction exportAction

povrayAction

org.openscience.jmol.app.Jmol.PovrayAction povrayAction

pdfAction

org.openscience.jmol.app.Jmol.PdfAction pdfAction

printAction

org.openscience.jmol.app.Jmol.PrintAction printAction

viewMeasurementTableAction

org.openscience.jmol.app.Jmol.ViewMeasurementTableAction viewMeasurementTableAction

defaultActions

javax.swing.Action[] defaultActions

Actions defined by the Jmol class

Class org.openscience.jmol.app.MeasurementTable extends javax.swing.JDialog implements Serializable

Serialized Fields

viewer

JmolViewer viewer

measurementTable

javax.swing.JTable measurementTable

measurementTableModel

org.openscience.jmol.app.MeasurementTable.MeasurementTableModel measurementTableModel

measurementSelection

javax.swing.ListSelectionModel measurementSelection

selectedMeasurementRow

int selectedMeasurementRow

deleteButton

javax.swing.JButton deleteButton

deleteAllButton

javax.swing.JButton deleteAllButton

stringClass

java.lang.Class stringClass

Class org.openscience.jmol.app.PovrayDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

viewer

JmolViewer viewer

povrayPathButton

javax.swing.JButton povrayPathButton

commandLineField

javax.swing.JTextField commandLineField

goButton

javax.swing.JButton goButton

saveField

javax.swing.JTextField saveField

savePathLabel

javax.swing.JTextField savePathLabel

outputWidth

int outputWidth

outputHeight

int outputHeight

povrayPathLabel

javax.swing.JTextField povrayPathLabel

runPovCheck

javax.swing.JCheckBox runPovCheck

useIniCheck

javax.swing.JCheckBox useIniCheck

allFramesCheck

javax.swing.JCheckBox allFramesCheck

antiAliasCheck

javax.swing.JCheckBox antiAliasCheck

displayWhileRenderingCheck

javax.swing.JCheckBox displayWhileRenderingCheck

imageSizeCheck

javax.swing.JCheckBox imageSizeCheck

imageSizeWidth

javax.swing.JLabel imageSizeWidth

imageSizeTextWidth

javax.swing.JFormattedTextField imageSizeTextWidth

imageSizeHeight

javax.swing.JLabel imageSizeHeight

imageSizeTextHeight

javax.swing.JFormattedTextField imageSizeTextHeight

imageSizeRatioBox

javax.swing.JCheckBox imageSizeRatioBox

imageSizeRatioCombo

javax.swing.JComboBox imageSizeRatioCombo

outputFormatCheck

javax.swing.JCheckBox outputFormatCheck

outputFormatCombo

javax.swing.JComboBox outputFormatCombo

outputAlphaCheck

javax.swing.JCheckBox outputAlphaCheck

mosaicPreviewCheck

javax.swing.JCheckBox mosaicPreviewCheck

mosaicPreviewStart

javax.swing.JLabel mosaicPreviewStart

mosaicPreviewComboStart

javax.swing.JComboBox mosaicPreviewComboStart

mosaicPreviewEnd

javax.swing.JLabel mosaicPreviewEnd

mosaicPreviewComboEnd

javax.swing.JComboBox mosaicPreviewComboEnd

updateActionListener

java.awt.event.ActionListener updateActionListener

updateInputVerifier

javax.swing.InputVerifier updateInputVerifier

updateItemListener

java.awt.event.ItemListener updateItemListener

Class org.openscience.jmol.app.PreferencesDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

autoBond

boolean autoBond

showHydrogens

boolean showHydrogens

showMeasurements

boolean showMeasurements

wireframeRotation

boolean wireframeRotation

perspectiveDepth

boolean perspectiveDepth

showAxes

boolean showAxes

showBoundingBox

boolean showBoundingBox

axesOrientationRasmol

boolean axesOrientationRasmol

openFilePreview

boolean openFilePreview

isLabelAtomColor

boolean isLabelAtomColor

isBondAtomColor

boolean isBondAtomColor

colorBackground

java.awt.Color colorBackground

colorSelection

java.awt.Color colorSelection

colorText

java.awt.Color colorText

colorBond

java.awt.Color colorBond

colorVector

java.awt.Color colorVector

colorMeasurement

java.awt.Color colorMeasurement

minBondDistance

float minBondDistance

bondTolerance

float bondTolerance

marBond

short marBond

percentVdwAtom

int percentVdwAtom

bButton

javax.swing.JButton bButton

pButton

javax.swing.JButton pButton

tButton

javax.swing.JButton tButton

eButton

javax.swing.JButton eButton

vButton

javax.swing.JButton vButton

measurementColorButton

javax.swing.JButton measurementColorButton

abYes

javax.swing.JRadioButton abYes

abNo

javax.swing.JRadioButton abNo

vdwPercentSlider

javax.swing.JSlider vdwPercentSlider

bdSlider

javax.swing.JSlider bdSlider

bwSlider

javax.swing.JSlider bwSlider

btSlider

javax.swing.JSlider btSlider

cH

javax.swing.JCheckBox cH

cM

javax.swing.JCheckBox cM

cbWireframeRotation

javax.swing.JCheckBox cbWireframeRotation

cbPerspectiveDepth

javax.swing.JCheckBox cbPerspectiveDepth

cbShowAxes

javax.swing.JCheckBox cbShowAxes

cbShowBoundingBox

javax.swing.JCheckBox cbShowBoundingBox

cbAxesOrientationRasmol

javax.swing.JCheckBox cbAxesOrientationRasmol

cbOpenFilePreview

javax.swing.JCheckBox cbOpenFilePreview

cbIsLabelAtomColor

javax.swing.JCheckBox cbIsLabelAtomColor

cbIsBondAtomColor

javax.swing.JCheckBox cbIsBondAtomColor

originalSystemProperties

java.util.Properties originalSystemProperties

jmolDefaultProperties

java.util.Properties jmolDefaultProperties

currentProperties

java.util.Properties currentProperties

prefsAction

org.openscience.jmol.app.PreferencesDialog.PrefsAction prefsAction

commands

java.util.Hashtable commands

viewer

JmolViewer viewer

guimap

org.openscience.jmol.app.GuiMap guimap

checkBoxListener

java.awt.event.ItemListener checkBoxListener

applyButton

javax.swing.JButton applyButton

jmolDefaultsButton

javax.swing.JButton jmolDefaultsButton

rasmolDefaultsButton

javax.swing.JButton rasmolDefaultsButton

cancelButton

javax.swing.JButton cancelButton

okButton

javax.swing.JButton okButton

Class org.openscience.jmol.app.ScriptWindow extends javax.swing.JDialog implements Serializable

Serialized Fields

console

org.openscience.jmol.app.ConsoleTextPane console

closeButton

javax.swing.JButton closeButton

runButton

javax.swing.JButton runButton

haltButton

javax.swing.JButton haltButton

clearButton

javax.swing.JButton clearButton

helpButton

javax.swing.JButton helpButton

viewer

JmolViewer viewer

Class org.openscience.jmol.app.Splash extends java.awt.Window implements Serializable

Serialized Fields

splashImage

java.awt.Image splashImage

imgWidth

int imgWidth

imgHeight

int imgHeight

status

java.lang.String status

textY

int textY

statusTop

int statusTop

Class org.openscience.jmol.app.WhatsNewDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

html

javax.swing.JEditorPane html

Package pdbParser

Class pdbParser.PDBProgressBar extends javax.swing.JWindow implements Serializable

Serialized Fields

writer

PDBwriter writer

bar

javax.swing.JProgressBar bar

status

boolean status

max

int max

frame

javax.swing.JFrame frame