A B C D E F G H I J K L M N O P R S T U V W X Y Z _

I

ImageTyper - Class in org.openscience.jmol.app

ImageTyper(JFileChooser) - Constructor for class org.openscience.jmol.app.ImageTyper

A simple panel with a combo box for allowing the user to choose the input file type.

inheritColix(short, short) - Static method in class org.jmol.g3d.Graphics3D

inheritColix(short, short, short) - Static method in class org.jmol.g3d.Graphics3D

init() - Method in class org.jmol.applet.Jmol

init() - Method in class org.jmol.applet.JmolAppletControl

init() - Method in class org.jmol.appletwrapper.AppletWrapper

init() - Method in interface org.jmol.appletwrapper.WrappedApplet

init() - Method in class org.jmol.jcamp.Visua

init() - Method in class org.jmol.jcamp.ZoneVisu

Init_File() - Method in class org.jmol.jcamp.ZoneVisu

initApplication() - Method in class org.jmol.applet.Jmol

initFile(String) - Method in class org.jmol.jcamp.Visua

initialize(Tuple, float) - Method in class org.jmol.bspt.SphereIterator

initialize to return all points within the sphere defined by center and radius

initializeHemisphere(Tuple, float) - Method in class org.jmol.bspt.SphereIterator

initialize to return all points within the hemisphere defined by center and radius.

initWindows() - Method in class org.jmol.applet.Jmol

Int2IntHash - Class in org.jmol.util

Int2IntHash(int) - Constructor for class org.jmol.util.Int2IntHash

Int2IntHash() - Constructor for class org.jmol.util.Int2IntHash

Int2ObjHash - Class in org.jmol.util

Int2ObjHash(int) - Constructor for class org.jmol.util.Int2ObjHash

Int2ObjHash() - Constructor for class org.jmol.util.Int2ObjHash

Integrate() - Method in class org.jmol.jcamp.ZoneVisu

Integration2 - Class in jmolOutsideApplicationTest

A example of integrating the Jmol viewer into a java application.

Integration2() - Constructor for class jmolOutsideApplicationTest.Integration2

intensitySpecularSurfaceLimit - Static variable in class org.jmol.g3d.Graphics3D

IntInt2ObjHash - Class in org.jmol.util

IntInt2ObjHash(int) - Constructor for class org.jmol.util.IntInt2ObjHash

IntInt2ObjHash() - Constructor for class org.jmol.util.IntInt2ObjHash

InvalidSmilesException - Exception in org.jmol.smiles

Exception thrown for invalid SMILES String

InvalidSmilesException() - Constructor for exception org.jmol.smiles.InvalidSmilesException

InvalidSmilesException(String) - Constructor for exception org.jmol.smiles.InvalidSmilesException

InvalidSmilesException(Throwable) - Constructor for exception org.jmol.smiles.InvalidSmilesException

InvalidSmilesException(String, Throwable) - Constructor for exception org.jmol.smiles.InvalidSmilesException

ionicLookupTable - Static variable in class org.jmol.viewer.JmolConstants

ionicMars - Static variable in class org.jmol.viewer.JmolConstants

IPDBreader - Interface in pdbParser

IPDBwriter - Interface in pdbParser

isAnyGreater(long, long) - Static method in class org.jmol.g3d.Xyzd

isAnyLess(long, long) - Static method in class org.jmol.g3d.Xyzd

isAnyNegative(long) - Static method in class org.jmol.g3d.Xyzd

isColixTranslucent(short) - Static method in class org.jmol.g3d.Graphics3D

isDataFlavorSupported(DataFlavor) - Method in class gui.dragndrop.TransferableTreeNode

isDebugModus() - Method in class msg.ProteinMatrix

isDirectedTowardsCamera(short) - Method in class org.jmol.g3d.Graphics3D

isJvm12orGreater() - Method in class org.jmol.api.JmolViewer

isJvm12orGreater() - Method in class org.jmol.viewer.Viewer

isLogging() - Method in class org.jmol.api.JmolAdapter.Logger

isModified() - Method in class protein.Protein

isNeighborVertex(short, short, int) - Method in class org.jmol.g3d.Graphics3D

isPressed() - Method in class msg.ProteinElement

isScriptExecuting() - Method in class org.jmol.api.JmolViewer

isScriptExecuting() - Method in class org.jmol.viewer.Viewer

isSelfmade() - Method in class protein.Protein

isShowTransparentLipids() - Method in class org.jmol.api.JmolViewer

isShowTransparentLipids() - Method in class org.jmol.viewer.Viewer

new: Returns the showTransparentLipids.

itemStateChanged(ItemEvent) - Method in class org.openscience.jmol.app.FileTyper