clipping from the front and the back
the plane is defined as a percentage from the back of the image
to the front
For slab values:
100 means 100% is shown
75 means the back 75% is shown
50 means the back half is shown
0 means that nothing is shown
for depth values:
0 means 100% is shown
25 means the back 25% is not shown
50 means the back half is not shown
100 means that nothing is shown
computes relevant values of the protein based on the Coordinates: scaleProteintoNull(),
setExtremePointsIndex(),
setSize(),
setxz_area(),
lipidFillingInCube().