Uses of Class
protein.Protein

Packages that use Protein

gui
membranModel
org.jmol.viewer
pdbParser

Uses of Protein in gui

Fields in gui declared as Protein

Protein	DefaultMutableTreeNodeProtein.protein
Protein	DefaultMutableTreeNodeFile.protein

Methods in gui that return Protein

Protein

DefaultMutableTreeNodeProtein.getProtein() Returns the protein at this node.

Methods in gui with parameters of type Protein

void	JPreview.computePDBManipulation(Protein givenProtein) Computes the yTranslation and the RotationMatrix of the PDB.
void	JPreview.fetchPDBManipulationFromProtein(Protein givenProtein) Computes the yTranslation and the RotationMatrix of the PDB.
void	DefaultMutableTreeNodeProtein.setProtein(Protein protein) Sets the protein object to the node.

Constructors in gui with parameters of type Protein

JmolPdbPreview(javax.swing.JPanel frame, Protein lipid, boolean restricted)
Creates a new JmolViewer located on the given JPanel.

JmolPdbPreview(javax.swing.JPanel frame, Protein lipid, boolean restricted, JPreview preview)
Creates a new JmolViewer located on the given JPanel.

Uses of Protein in membranModel

Methods in membranModel that return Protein

Protein	MembranModel.getBiLayerType()
Protein	MembranModel.getProtein(java.lang.String PDBCode)

Methods in membranModel with parameters of type Protein

void	MembranModel.addProtein(Protein protein) This function adds one protein to the membrane model

Uses of Protein in org.jmol.viewer

Methods in org.jmol.viewer with parameters of type Protein

static JmolViewer

Viewer.allocateViewer(java.awt.Component awtComponent, JmolAdapter modelAdapter, boolean restricted, javax.swing.JPanel frame, Protein lipid)

Uses of Protein in pdbParser

Methods in pdbParser that return Protein

Protein	PDBreader.getProtein(java.lang.String PDBcode, java.lang.String DBpath) This function creates a Protein object by given PDBname and directory.
Protein	IPDBreader.getProtein(java.lang.String PDBcode, java.lang.String DBpath)