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CELLmicrosomos neXt Proceedings

Björn Sommer (Ed.) (DOI: 10.2390/biecoll-next2014-0)
Towards a 3D Cell Model of Chlamydomonas reinhardtii
Niklas Biere,Anja Doebbe, Nils Rothe, Thomas Huser, Olaf Kruse, Björn Sommer (DOI: 10.2390/biecoll-next2014-2)


The program is found here. Meet us on Sunday in U2-205 at Bielefeld University main building!

Time Topics Presenter
10:00 - 12:00 CELLmicrocosmos Workshop: Cell Modeling at the Molecular, Mesoscopic and Functional level (Hands-on!) Björn Sommer, Bielefeld University
12:00 - 14:00 Lunch Break
14:00 - 14:50 CELLmicrosomos X Extended Abstract Björn Sommer, Bielefeld University
14:50 - 15:10 Towards a 3D Cell Model of Chlamydomonas reinhardtii     Niklas Biere, Bielefeld University
15:10 - 15:30 Evaluation and Visualization of Pathway Efficiency based on Subcellular Protein Localizations     Olga Popik, SB RAS Novosibirsk
15:30 - 16:00 Top-down Systems Biology Approaches for -omics-based Tissue and Biofluid Analytics     Kirill Veselkov, Imperial London
16:00 - 16:30 Coffee Break
16:30 - 17:00 Web-based Visualization with D3     Ahmet R. Öztürk,
Erciyes University
17:00 - 17:30 Towards a web-based Viewer for the PathwayIntegration     Gökhan Kovanci,
Bielefeld University
17:30 - 18:00 Web-based MD Simulations using MoSGrid     Jens Krüger, Tübingen University
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The workshop takes place in context of the German Conference on Bioinformatics. To register for the workshop, please send an email to This email address is being protected from spambots. You need JavaScript enabled to view it. .

For the conference, please register at:


  • 28.08. Early Registration Deadline GCB 2014
  • 28.09. Workshop
  • 29.09 - 01.10. Conference

Accomodation and Travel

Bielefeld is quite easy to reach from abroad by using the airport Hannover (ca. 100 km from Bielefeld, ca. 1.5 h traveling by ICE). More information on the main page of the GCB:



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Important Dates

Find here the important dates:

  • 14.07. Call for Abstract published
  • 17.08. Deadline Abstract Submission (Extended!)
  • 25.08. Notification of Acceptance
  • 28.08. Early Registration Deadline GCB 2014
  • 14.09. Final Version of Abstract Deadline
  • 28.09. Workshop
  • 11.11. Proceedings published


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The aim of CELLmicrocosmos is the interactive stereoscopic visualization of biological cells for a better understanding of their internal structures and their functioning.

Based on microscopic datasets, biological cells are reconstructed in 3D models. Via Virtual Reality (VR) techniques they can be explored interactively for educational and scientific purposes.   [more]