CELLmicrocosmos.org

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  • selected  start
    • selected  selected  startCm2 (SSL)
  • unselected  download ...
    • unselected  unselected  downloadCm2 (SSL)
    • unselected  unselected  membrane files
  • unselected  help ...
    • unselected  unselected  1. Introduction ...
      • unselected  unselected  unselected  1.1. About the MembraneEditor
      • unselected  unselected  unselected  1.2 Features
      • unselected  unselected  unselected  1.3 The UI Components
      • unselected  unselected  unselected  1.4 Requirements
    • unselected  unselected  2. The GUI ...
      • unselected  unselected  unselected  2.1 Using the GUI
      • unselected  unselected  unselected  2.2 Shortcuts
      • unselected  unselected  unselected  2.3 3D Stereoscopy
    • unselected  unselected  3. Managing local PDB Files ...
      • unselected  unselected  unselected  3.1 Setting a Database
      • unselected  unselected  unselected  3.2 Handling your files
      • unselected  unselected  unselected  3.3 Gaining Information
      • unselected  unselected  unselected  3.4 Managing Models
    • unselected  unselected  4. The PDB Integration ...
      • unselected  unselected  unselected  4.1 Search & Download
      • unselected  unselected  unselected  4.2 Internet Configuration
    • unselected  unselected  5. Building a Membrane ...
      • unselected  unselected  unselected  5.1 The File Menu
      • unselected  unselected  unselected  5.2 Dealing with Molecules
      • unselected  unselected  unselected  5.3 Aligning Molecules
      • unselected  unselected  unselected  5.4 More about the 3D Feature
      • unselected  unselected  unselected  5.5 3D-Settings
      • unselected  unselected  unselected  5.6 Manage Title Section
    • unselected  unselected  6. Special Membrane Properties ...
      • unselected  unselected  unselected  6.1. Using Microdomains
      • unselected  unselected  unselected  6.2. Using Multilayers
    • unselected  unselected  7. Atomic Representation ...
      • unselected  unselected  unselected  7.1. About
      • unselected  unselected  unselected  7.2. Predefine Conformation
      • unselected  unselected  unselected  7.3. Changing Granularity / Coarse Graining
    • unselected  unselected  8. The Lipid Bilayer ...
      • unselected  unselected  unselected  8.1 Running a Membrane Algorithm
      • unselected  unselected  unselected  8.2 Included Algorithms
      • unselected  unselected  unselected  8.2.1 Linear Placing
      • unselected  unselected  unselected  8.2.2 Random Placing
      • unselected  unselected  unselected  8.2.3 Advanced Random Placing
      • unselected  unselected  unselected  8.2.4 Simulated Annealing
      • unselected  unselected  unselected  8.2.5 Distributor
      • unselected  unselected  unselected  8.2.6 Atom Level Minimizer
      • unselected  unselected  unselected  8.2.7 The Wanderer (Rookie)
    • unselected  unselected  9. Generating Output ...
      • unselected  unselected  unselected  9.1 Pdb output settings - Dealing with limitation and compatibility issues
      • unselected  unselected  unselected  9.2 Written Contents
      • unselected  unselected  unselected  9.3 Preview your Membrane
      • unselected  unselected  unselected  9.4 Saving the Membrane File
      • unselected  unselected  unselected  9.5 Rebuild Membrane Model from existing pdb file
      • unselected  unselected  unselected  9.6 Membrane Analysis with APL@Voro
    • unselected  unselected  10. Import / Manage Algorithms
    • unselected  unselected  11. More about the Editor ...
      • unselected  unselected  unselected  11.1 Future Plans / Known Issues
      • unselected  unselected  unselected  11.2 Cm2 Team
      • unselected  unselected  unselected  11.3 Copyright
      • unselected  unselected  unselected  11.4 List of external Sources and Packages
      • unselected  unselected  unselected  11.5 History
  • unselected  developer ...
    • unselected  unselected  Introduction
    • unselected  unselected  Library and Documentation
    • unselected  unselected  Creating a new Membrane Algorithm
    • unselected  unselected  Overriding the Methods from the interface
    • unselected  unselected  Essential Methods and Objects
    • unselected  unselected  Finishing your Membrane Packing Algorithm
    • unselected  unselected  Writing a good Membrane Algorithm
    • unselected  unselected  Example
    • unselected  unselected  Forcefield Development Hints
  • unselected  videos
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  • unselected  apl@voro ...
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    • unselected  unselected  algorithms
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